Pungitius pungitius (ninespine stickleback): 119226348
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Entry
119226348 CDS
T07626
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119226348
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
119226348
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
119226348
NCBI-ProteinID:
XP_037340132
LinkDB
All DBs
Position
18:6319617..6375119
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AA seq
2103 aa
AA seq
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MTTAANCVANGASLEDCHSNIFSLAELTGIKWRCYSFRGSGEYGPVISSPAQDDPVLRSF
MRCVQANLLCVWRRKVKPDAKELWIFWWGEEPRLADVIHQELEVSEEGLWECGLSYECRT
LLFKAIHNLLERCLMDKGFVRIGKWFFKPHELQEKSLGNSEHLSCSFSFFLHGESNVCTS
VEIAQHQPAYHVTEHHVRLAQASITPIQVILSPYGLSGTLTGQAFKMSDPATRKLMEEWS
YFYPVVLPLKEGSGAKDKGEGGQTYDRNCHAAVEVIVGGVRMTYPAALVLIAQGDLPLEQ
SPPVPATQGLSRELNHCSVPLTPPASPQQPCSADSGFVTSISSVPTPDSGMGVASVSPKH
SGKKLTSQVVHQAWRECYLNQPPHALNSPTGVSLNKDAPSGVTAWDFSDLEARVSCSCSR
LKQQKLNLTATANPQTSANPTQSSGVSLYPPSLPKHKTSDKTEKADKQSKRPAVISFHHR
LSVPRETPLEQDPAGGPQLALEPSLEPPSALPSCKYPKLLSNGRKAPESHLHSPMSPLPP
TLSPHPRVQDPEVLDGPVDIPLCPEGAFASETAVYTALLRQRENGASWWRGFRTPRTDET
DCRPCELPADALEEVKTETAAEGALLKRLYTQTHKRFKISEERVRDHIHTLGLFQQPGVE
ALREPGEDPYDFKEGDIEYTFSSSKRLKGQGREHSKKAKGEEITSNGALPDGNDAMSIFN
SAPKSEESGQDADGAAKANPSLTREKDLVVNISDLDNIFDEDEEELGTVYPNQHSSKLPA
STEDRPLGKEGRVAVPYPSTVADLQRMFPTPPSLEQHPAFSPATTYRDTPSQEPPVHSGA
ADHLLPLASSQFTEYRMEIDEGMASPGLEDLKPQIGSSMFAPLSCLPSHSLPPLKITEQC
YYRPSWALMPKMEHFPLMHSHNATFNRDGYTNVPSVTTLTDQEYGQMSTTTASVSTNAGI
LPSPATPRFSVPTPRTPRTPRGVNAASSGQGSVKQDGTEISSPASTPSTSLPLSSVDPLA
RPGPSLPEAHSLYAILLLSDSVLNVFKDRNFDSCCICACNMNVKGADVGVYIPDSTGEDQ
YRCMCGFSAIVNRRLAHGTGLFLEDELDIYGRTSEVGRAAERRLALCRRDPSMGDTRAKR
AQDAAPASPLVMILLQEHCSQPISSLASLHLPLSCSCHGRKGALLQSWVSEKQWADGSDA
CVDCYNALEQGLQYVDNSTGGKVDPAVVRSTALHSWPHTNVVDMNMLSSQDMVRVLLSLQ
PFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKMAGRGSYGSEESPEPLPIPTVLLGYDT
DFLALSPLALPFWEKLLLEPYGGPRDVAYVVLCPSSPSLLAAARAFFQELSAVYEMCRLG
KHRPLAKVSRDGLVRVGEEVEAEKLEALGVDQWVTGPWAGQQHSDNLGKLKLYAYACNQQ
LGPQLSALSLDGSLLLPPSHPASSAPPASSGQPHAWGPDGGPAAGAVSAGTASTPTAATS
SQTGETTHGAMSDPKGPPSATPPATTPAENPELTAEQSRIGIPTVADSMDSLANPPAIVI
YIVDAFLGSSGARNEGGEEDEGDEVEASSIWLLGLLRCYTEMLKTLPETMRPALVLQVVP
CQYLLQPASGESHLYLQHLRSLSFSCYSQCRRLLPQQTPIKSLTGFGPVSNVNSVLKSPE
HPSPLQLYTPPFILGPTRSKQPEPGEIWAEIPPKYNVLFVGYCLSHDQRWILVSCTDQQG
ELLETSIINIDVPNRARRPKVSARKMGLQKLWEWCIGIIQMTSLPWRIVIGRLGRLGHGE
LKDWSSLLGEHSLHSIGRQLREACRMCGISAADSPSILSACLVAMEPQGSFVIMPDAVTM
GSVFGRSTALNLQTSQLNTPQDASCTHILVFPTSATTQLAPSSYPTEDNEDNNDDMFGLP
FPDELENDIGHDMMLITGNLHTSPNTSPVPSPGSPSGMGMGSHFQHNKNQGERLMSRDSP
PEELKQQPLALGYYVSTAQANGLPHWFWASCPQAESQCPLFLKASLHHHISIAQTDELAS
DKTKRSPHPLDSKKTSDVLRFVLEQYNALSWLTCTPATQDRQSCLPVHLAVLIQMYNAIL
NML
NT seq
6312 nt
NT seq
+upstream
nt +downstream
nt
atgactacggcagcgaattgcgtggctaacggggcaagccttgaggactgccactccaac
atcttctccctggctgagttgacgggcatcaaatggcgctgctatagcttccgcggcagc
ggggagtacgggccggtgatctcctccccggcccaggacgacccggttctgcgcagcttc
atgcgctgcgtgcaggccaacctgctgtgcgtgtggcgccgcaaagtcaagcccgacgcc
aaggagctgtggatcttctggtggggcgaggagccccgcctcgccgacgtcattcaccag
gagctggaagtgtctgaggagggactctgggagtgcggcctgtcctacgagtgccggacc
ctcctgttcaaggctatacacaacctgctggaaagatgtctgatggataaagggtttgtg
agaatcgggaaatggtttttcaagccacacgaactgcaagaaaagtcgctgggcaacagt
gaacacctgtcgtgttccttctccttcttcctccacggggagagcaacgtgtgcacgagt
gtggagatcgcccagcaccagcctgcgtaccacgtcacagagcaccacgtccgcctcgca
caggcctccatcacgccgatacaagttatcctgagtccgtacggcctgagcggcactctc
acgggtcaggcattcaagatgagcgacccggcgacgcgcaagctgatggaggagtggagt
tacttctacccggtggtccttccgctcaaagagggaagtggagcaaaggacaagggagag
gggggccagacctatgatcgcaactgtcacgcggcggtggaggtcatcgtgggtggagta
aggatgacgtacccagctgccttagtgctgatagcccagggcgacctgccgctggagcag
tctccacctgttcctgcaactcagggcctcagcagggagctgaaccactgcagcgtgcca
ctcacaccgccggcgtcgccgcagcagccctgctcagcggacagcggcttcgtgacgtcc
atctccagcgtccccacgccagacagcggcatgggggttgccagcgtcagcccaaagcat
tctgggaaaaagctaacctctcaggtagtccaccaagcctggagggaatgctatctcaac
cagcctccgcatgcattgaactctccaactggcgtatcgcttaacaaggacgcgcccagt
ggagtaaccgcctgggacttcagcgatctggaagccagagtgtcctgcagctgctccagg
ttaaagcagcagaagttgaacctgactgccactgccaacccccagacgagtgccaatccc
acacagtcctccggcgtgtcgttgtaccccccctccctgcccaaacacaagaccagcgac
aagacggagaaggctgacaaacagtccaagaggcccgccgtgatctccttccaccaccgt
ctatcggtcccccgtgagacccctctggaacaggacccagcaggggggcctcagctcgcc
ctggagccgtccttggagcctccttccgctctgcccagctgcaagtatcccaagctcctc
tccaatggcaggaaagcccccgagtcccatctgcattcgccaatgtctccactcccgccc
acgctcagcccgcacccccgggtgcaggacccggaggtcctggatgggcccgtggacatc
cccctctgtccggagggggctttcgccagcgaaaccgccgtgtatacagctctgctgagg
cagagggagaacggggccagctggtggagaggcttcaggacacccaggacggatgagact
gactgcaggccctgtgaactccccgctgacgcgctagaggaggtgaagacggagacagcg
gccgaaggagcgctgctgaagagactgtatacacagactcacaagagatttaaaatctca
gaggagagggtgagggaccacatccacactttgggcctgttccagcagccgggtgtggag
gcgctgcgggagcccggggaggacccctacgactttaaggagggagacatcgagtacacg
ttctcctcttcaaagcggttaaagggtcaggggcgagaacacagcaagaaggccaaggga
gaagaaatcaccagcaacggagcactgcctgacgggaacgatgcaatgtcgatttttaac
tcggctccgaaatcggaagaatcaggtcaggatgccgatggagccgccaaggccaaccct
tctctgaccagagaaaaagatctggtggtcaacatctcagatctagacaacatatttgat
gaagatgaagaagaactggggactgtttaccccaaccagcactcaagcaagctaccagca
tccacagaagatcgtcctctgggcaaagaagggagagtcgctgtaccgtatccatcgaca
gtagcagacctccagaggatgtttcccacgccaccttccttggagcagcacccagccttc
tctcccgccaccacgtaccgtgacacgccgagccaagagccccccgtgcacagcggagcg
gcagaccacctgctgcctttggcctcctcccagttcaccgaataccggatggagattgac
gagggcatggccagccccgggctggaggatctcaagccacaaattggctcctccatgttt
gctccgctctcctgcttacccagccacagtctaccgccactcaagattaccgagcaatgc
tactatcgtccatcctgggccctcatgcccaagatggagcatttcccgctcatgcattcc
cataatgccactttcaacagggatggatacacgaacgtgccaagtgtcaccaccctcacg
gaccaggagtacggccagatgagcactaccactgcctctgtgagcaccaacgcgggcatc
ctgccgtctccggccacgccccgcttctccgtgcccaccccgcggaccccccgcacgccg
cggggcgtgaacgccgcgagctccgggcagggctcggtgaagcaggacggcactgagatc
agctcgccggcctccacgccctccaccagcctgcctctcagctccgtggaccctctggct
cggccgggaccctccctgcccgaggctcacagcctgtacgccatcctcctgctctcggac
tccgtcctcaacgtcttcaaggatcgcaactttgacagctgctgcatctgtgcctgcaat
atgaatgtcaaaggagcagacgttggggtgtacatccccgattccactggcgaagatcag
taccgctgtatgtgcggcttcagtgccatcgtgaacaggcggctggcccacggcacgggc
ctcttcctggaggacgagctggacatttatggccggacttctgaggtcggccgggcggcc
gagcggaggctggccctctgcaggcgggaccccagcatgggggacacgagggccaagcgc
gcgcaggacgcggcccccgcctcgcctttggtcatgatcctgctgcaggagcactgctcc
cagcccatttcctccttggcgtcactgcatctgcccctcagctgctcgtgccacggacgc
aagggagcgctgctccaaagctgggtgtccgagaagcagtgggccgacgggagcgacgcc
tgcgtggactgttacaacgccttggagcaggggttacagtatgtggacaactccacggga
ggcaaagtagatccggctgttgtcagaagtacagcccttcactcctggcctcatacaaat
gtggtggacatgaacatgctgtcgtcgcaggacatggttcgggtgctgctgtctctgcag
cctttcttgcaggatgcgatccagaagaagagaacaggacggacctgggaaaacatccag
cacgttcagggtccgctcacctggcagcagttccataagatggccgggagaggctcctac
ggttcggaagagtcaccggagcccttgcccatcccgacagtgttactgggctacgacacg
gacttcttggcgttgtcccctctggcgttgcctttctgggagaagctgctactcgagcct
tacggggggccgcgggatgtggcgtacgtcgtcctgtgccccagtagcccctctctgctg
gccgcggcccgcgccttcttccaggagctcagcgccgtctacgagatgtgccgcctcggg
aagcaccgccctctggccaaggtgtccagggacggcctggtgcgcgtgggagaagaagtg
gaagcggagaagctggaggcgctgggtgtggaccagtgggtgactggaccgtgggcagga
cagcagcacagcgacaacctcggcaagctcaagctctacgcgtatgcgtgcaaccagcag
ctcggtccccagctgtcagcgctttcattggacggcagcctcctgttgcctccctcacac
ccggcatcctcagccccgcctgcctcctctgggcagcctcacgcttggggccctgacggt
ggaccggctgcaggggcggtcagcgcgggaaccgcttcgaccccgactgcggcgacctcg
agccagacgggggagacgacccacggtgcgatgagtgaccccaaaggcccacccagtgcc
acaccaccagccaccacaccagcagaaaacccggagctcaccgcagagcagtccaggatt
ggcatccccaccgtggccgattctatggacagcctcgccaacccgccggctatcgttatt
tacatagtggatgcttttcttggctcaagtggagcgaggaatgaaggcggagaggaagac
gagggggacgaagtggaggccagtagcatttggctgctagggctacttcgctgctacaca
gagatgctgaagactttgcccgagacgatgagacctgcacttgtactacaggtcgtgccg
tgccaataccttctccagccggccagtggggagagccatctctacctgcaacatctgcgc
tccctgtccttctcctgctactcccaatgcagacggctcctgccccagcaaacccccatc
aagtccctgacgggcttcggcccagtgtcgaatgttaactccgtgcttaagagtccagag
catcctagcccactgcagctgtacacgccccccttcatccttgggcccacccgttccaag
cagccagaaccaggggagatatgggcagagatccctcccaaatacaatgtgctctttgtt
ggatactgcctatcacatgaccagcgctggatccttgtgtcctgcactgaccagcagggg
gagctcctggagaccagtatcatcaacattgatgtccccaacagagcgcgacgtcccaag
gtttcagccagaaagatgggactgcagaagctgtgggaatggtgtattggcatcatccag
atgacctcactgccatggaggattgtgattggacgactgggccggctggggcacggagag
ctgaaagactggagctcactcctcggggagcattccctccattcaatagggcgccagctg
agggaagcgtgtcgaatgtgtggcatctcggccgctgactcccccagcatcctcagtgcc
tgcctggtagccatggagccacagggctcctttgtgatcatgcctgatgcagtcaccatg
ggctccgtgtttggacgcagcactgctctgaacttgcagacgtcgcagctgaacacgcct
caggatgcttcctgtactcacatcctcgtctttccaacttctgccaccacccagctggct
cccagctcctaccctactgaggacaatgaggacaacaatgatgacatgttcggtctgccc
tttcctgatgaactggagaacgacattggccacgacatgatgctcatcactggcaacctc
cacacgtcccccaacacgtctcccgtgccctcgccaggctctccgtccgggatgggcatg
gggtcgcatttccagcacaacaagaaccaaggagagcgcttgatgtccagggacagtcca
ccagaggagctgaagcagcagccgctggctctgggctactacgtctccactgctcaagca
aacggacttcctcactggttctgggcctcctgtccgcaggctgagagccagtgtccgctc
ttcctcaaggcttccctccaccaccacatctccatagcgcagacggatgagttggcatcc
gacaagaccaagaggtcccctcaccccttggactcaaagaaaacctcagatgtgctcagg
tttgtattggagcagtacaacgccctctcctggctgacctgcacgcctgccacccaagac
cgccagtcctgcctgcccgtccacttggctgtgctgatccagatgtacaacgccatcctg
aacatgctttga
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integrated database retrieval system
