Pungitius pungitius (ninespine stickleback): 119226377
Help
Entry
119226377 CDS
T07626
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppug03009
]
119226377 (ddx55)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119226377 (ddx55)
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
Pre-60S particles
Helicases
119226377 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
SBF_like
Motif
Other DBs
NCBI-GeneID:
119226377
NCBI-ProteinID:
XP_037340198
LinkDB
All DBs
Position
Unknown
AA seq
598 aa
AA seq
DB search
MNNSTEGTWDTLPTPLTEGILQTLEEVKFTHMTPVQSACIPLFMSNKDVAAEAVTGSGKT
LAFVIPIIELLLRREEKLKKMQVGALVITPTRELALQISEVMALFTNKFPQFTQILLIGG
TNPIDDVEKFKENGANIVIATPGRLEDMFRRKPDGLDLASSVRSLDVLVLDEADRLLDMG
FEASLNTILAHLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAESAVVQKTP
SRLCNYFTICRTENKFNSLVAFLRQHKQEKHLVFFSTCACVEYFGRALETLVKKVTVHAI
HGKMKNKRNKIFAEFRALKGGILVCTDVMARGIDIPDVHWVLQYDPPSSASAFVHRCGRT
ARIGNHGNALVFLLPMEESYVNFLSINQKCPLQKMVLTEEVVDVLPKVKAMSLADRAMFD
RGMRAFVSFVQAYAKHECSLIFRLKDLNFSTLARGFALLRMPKMPELKGKTFPGFDRTAL
DTDTIRYKDKNREKLRQKMLAELKERPPLPKRSFIKNKSWSKQKTKTERRKKRSAKRKHE
EGSDVEDEDMKELLNDTRILKKLKKGKISEEDFEKQITSRPEKNKIPGGGASGEEEAA
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaataactcgacagaaggaacgtgggacactttgccgactcctctcactgaggggatt
ttacagacgctcgaggaagtgaagttcacgcacatgacacctgtgcagtccgcgtgcatc
ccgctcttcatgagcaacaaggacgtcgctgcggaggcggtgaccggcagcgggaagacg
ctcgccttcgtcatccccatcatcgagctgctgctgaggagggaggagaagctgaagaag
atgcaggtgggcgccttggtgatcactcccaccagggagctggccctccagatcagcgaa
gtgatggcgcttttcaccaacaagtttccacagtttacgcagattttgctgatcggtggc
accaacccgatagacgacgtggagaagtttaaggagaacggggcgaacattgtgatagcg
acgccgggccgcctggaggacatgttcaggaggaagccggacggtctggacctggcgagc
tcggtcaggagcctggacgtcctggttctggacgaggccgaccggctgctggacatgggg
tttgaagccagtctgaacaccatcctggcccacctgcccaaacagaggcgcacgggcctg
ttctcggccactcagactcaggagctggagaagctggtgagggccggcctccgcaacccg
gtgcgcatcacggtgaaggagaagggcgtggccgagtccgccgtcgtccagaagacgccg
tccaggctctgcaactacttcacgatatgcagaacagagaacaagttcaacagcctggtg
gcgtttctacggcaacacaagcaggaaaagcacctggtcttcttcagcacgtgcgcgtgt
gtcgagtactttggccgcgccctggagactctggtgaagaaggtcaccgtgcacgccatc
cacggcaagatgaagaacaaacgcaacaagatcttcgccgaattccgggccctgaaaggt
gggatcctcgtgtgcacggacgtgatggcgagagggatcgacatccccgacgtgcactgg
gtgctgcagtacgacccgcccagcagcgccagcgcgttcgtgcatcgctgtggacgtacg
gcccgtatcggtaaccacggcaacgccctcgtctttctgctaccgatggaagagtcctac
gtaaactttttgtccatcaatcagaaatgtcccctccagaagatggtcctcacagaggag
gtggtggacgtgctgcccaaggtgaaggccatgtcgctggcggaccgagccatgttcgac
cgcggcatgagggccttcgtgtccttcgtgcaggcctacgccaaacacgaatgcagcctc
attttccggctcaaagatctgaacttctccaccttggcgcgcggcttcgccctcctccgc
atgcccaagatgcccgagctgaaggggaagacgttccccggcttcgacaggacggcgctg
gacacggacaccatccgctacaaggacaagaaccgggagaagctgaggcagaagatgctg
gctgagctgaaggagaggccgccgctcccaaagaggagcttcatcaagaacaagtcgtgg
tccaagcagaagaccaagacggagcgtaggaagaagaggtcggccaagaggaagcacgag
gagggctccgacgtggaggacgaagacatgaaggagctcttaaacgacactcgaatcctc
aagaagctcaagaaggggaaaatcagcgaggaggactttgagaagcagataacgagcaga
ccggaaaaaaacaaaatccccgggggcggagcctcgggcgaggaggaggcggcgtga
DBGET
integrated database retrieval system
