Pungitius pungitius (ninespine stickleback): 119226382
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Entry
119226382 CDS
T07626
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppug03009
]
119226382 (ddx56)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119226382 (ddx56)
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
Pre-60S particles
Helicases
119226382 (ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
119226382
NCBI-ProteinID:
XP_037340215
LinkDB
All DBs
Position
18:complement(853038..858007)
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AA seq
558 aa
AA seq
DB search
MAAERLQFHEMGLDDRLLKVVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY
AVPVIQRILASKQSVREQDVRALILVPTKELGQQVQAMIRQLTAFCSRDVRVADVSGKTD
LSAQRPVLMEKPDVVVGTPSRVLAHLAAQNLVLHSSLEMLVVDEADLLFSFGFEADLKSL
LCHLPKIYQSFLMSATFTEDVQALKELLLHNPVILKLQGSQLPDSSQLQQYSIKCEEEDK
FLLVYTLLKLRLVQGKTLVFVGSVDRSYRLKLFMEQFGIPACVLNSELPVQSRCHIITQF
NQGFYDYIIATDEQSLADPAAAAAPPPPSKGKKKKSSERGGRSKDKEFGVSRGVDFQNVA
NVLNFDFPLTVESYIHRVGRTARADNPGTALSLISHTELGLLEEVEEALTGDNAESVLKP
YTFRMEEIEGFRYRCRDAMRSVTKQAVREARLKEIKQELLNSEKLKTYFEDNPRDLQLLR
HDKDLHPAVIKPHLRNVPEYLVPETLKGCVNPLSARRRRKTALRSKPDGVVKSSFKKNLR
GKNPLKSFRYSGPRSSRS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagaaaggcttcagttccacgagatgggcttagacgaccgacttttaaaggtg
gttgcagacctgggctggtcccagccgacgctcatccaggagaaggccatccctttggcg
ctggaggggaaagacctgctggctcgagctcgcaccggatcggggaagaccgccgcctac
gccgtccccgtcatccagcgcatcctggcctccaaacagagcgtccgagagcaggacgtg
agggctctgatcctggttccgaccaaagagctgggtcagcaggtccaggccatgatccga
cagctaacggccttctgctccagagacgtccgagtggctgacgtctccgggaaaacggac
ctgtccgcacagaggcccgtcttaatggagaagcccgacgtggtcgtggggacgccgtcc
cgcgtgctcgcccacctcgccgcccagaacctggtgctccattcgtccctggagatgctg
gtggttgacgaggccgacctgctcttctccttcggcttcgaggccgacctgaagagcttg
ttgtgccacctgccgaagatctaccagtcgttcctgatgtcggcgaccttcaccgaggac
gttcaggccctgaaggagctgctgcttcacaaccccgtgatcctgaagcttcagggctct
cagctccccgacagcagccagctgcagcagtacagcatcaagtgcgaggaggaggacaag
ttcctgctggtctacacgctgctgaagctgcgtctggtccaggggaagacgctggtcttc
gtgggctcggtggaccggagctacagactcaaactcttcatggagcagtttggtattccc
gcctgcgtgctcaactccgagctgcccgtccagtccaggtgtcacatcatcacgcagttc
aaccagggcttctacgactacatcatcgccacagacgagcagagcctggcggaccccgcc
gccgccgccgctccgccgccccccagcaaagggaagaagaagaagagctctgagagagga
ggaaggtcgaaggacaaagagttcggggtctccagaggagtcgacttccagaacgtcgcc
aacgtcctcaacttcgatttccctctcacggtggagtcgtacatccaccgcgtggggaga
acggcgagggcagacaaccccggcacggcgctgtccctgatctcccacacggaactgggg
ctgctggaggaggtggaggaggcgctgacgggagataacgccgagtcggttctcaaaccg
tacaccttcaggatggaggagatcgaaggcttcaggtacaggtgcagggacgccatgcgg
tcagtgacgaagcaggcggtgagggaggcgcggctgaaggagatcaagcaggagctcctc
aactcagagaaactcaagacgtatttcgaggacaaccccagagaccttcagctgctccga
cacgacaaagacctccaccctgccgtcatcaaacctcacctgaggaacgtcccggagtac
ctcgttcctgagacgctgaagggctgcgtcaacccgctgtccgcccgcaggaggaggaag
acggcgctccgatccaagccggacggagtcgtcaagagcagcttcaagaagaacctccgg
gggaagaaccctctgaagagcttccgatacagcgggccgaggagcagccgctcgtaa
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