Pungitius pungitius (ninespine stickleback): 119226600
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Entry
119226600 CDS
T07626
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119226600 (vldlr)
Membrane trafficking [BR:
ppug04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
119226600 (vldlr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Motif
Other DBs
NCBI-GeneID:
119226600
NCBI-ProteinID:
XP_037340622
LinkDB
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Position
18:complement(11086577..11116101)
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AA seq
864 aa
AA seq
DB search
MITFAPVILLLPMLICLQHCINVHGTKTECEASQFQCGNGRCIPSVWQCDGDEDCTDGSD
EDSCVGKSCDALDFVCRNGQCVPKRWQCDGEPDCEDGSDESAEICHMRTCRVNEFSCGAG
STQCIPVFWKCDGEKDCDNGEDEVNCGNVTCAPNEFTCASGRCISRNFVCNGEDDCGDGS
DEVECAPSSCGPTEFQCGNSSCIPASWVCDDDVDCQDQSDESLSRCGRHPTPPAKCSSSE
MQCSSGECIHKKWRCDGDPDCKDGSDEANCPTRSCGPDQFRCDDATCILGSKQCNSLRDC
ADGSDEVNCKNMTQCNGPEKFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNHNECLLN
NGGCSHICKDMVIGFECDCTPGLQLIDHKTCGDINECMNPGICSQICINLKGGYKCECHN
GYQMDPTTGVCKAVGKEPCLIFTNRRDIRRLGLERKEYTQIVEQQRNTVALDADFNQQMI
FWADLGQRAVYSTLLDKRGDVGTHNKVIDNVQTPVGIALDWIYKNIYWSDLGTKTISVAN
FNGTKQKLLFNKGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVATDIQW
PNGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRKKVLQSPQYLAHPFALTVFEDRVFWTD
GENKAIYGANKFTGSDVVTLASNLNDPQDIIVYHELIQLSGTNWCAEKGENGGCSYMCLP
APQINKHSPKYTCVCAEGQEVAADGHRCRPEYSTKGPSKDDGKALTRPPSEANVGTSIQV
DSTARGSAAAWAILPVLLLAMAVGGGYLMWRNWQLRNQKSMNFDNPVYLKTTEEDLNIDI
TRHGANVGHTYPAISIVSTEDDLS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgatcacgttcgcacccgtgatcctcctgctaccgatgctaatatgtctgcagcactgc
atcaacgtccacggtacaaagacggaatgtgaggccagccagttccagtgtggaaacggt
cgctgcatcccctccgtgtggcagtgtgacggagacgaggactgcaccgatggcagtgac
gaggactcctgtgttggaaaatcttgtgatgcgctggactttgtgtgtcgcaacggccaa
tgtgtcccgaaacgatggcaatgtgacggggagccagactgcgaggacgggtcagacgag
agcgccgaaatctgccacatgaggacatgtcgtgtgaacgagttcagctgtggcgccggc
tccactcagtgcatcccggtcttctggaaatgtgacggcgagaaggactgtgacaacggc
gaggacgaggtcaactgtggcaacgtcacctgtgctccaaatgagttcacctgcgccagc
gggcgctgcatctcccgaaactttgtttgtaacggcgaggacgactgtggcgacggctct
gacgaggtggagtgcgcgccctcctcctgcggccccacggagttccagtgtggaaactcc
tcttgcatccctgccagctgggtgtgtgacgacgacgttgactgccaggaccagtcagat
gagtctctgtctcgctgcgggcgccacccgacgccaccggccaagtgttcgtccagtgag
atgcagtgcagctcaggggagtgtattcacaagaagtggagatgtgatggagaccctgac
tgcaaggatggcagcgacgaagccaactgccctacacgcagttgtggaccagatcaattc
agatgtgatgatgccacctgcatcctgggcagtaaacagtgtaacagcctcagagactgc
gccgatggatcggacgaagtcaactgcaaaaacatgacccagtgtaacggaccagagaag
ttcaagtgccgcagcggggagtgtatagagatgagcaaagtgtgcaacaaggcccgagac
tgtcccgactggagcgacgaacccatcaaggaatgcaatcataacgagtgtctcctgaac
aacggtggctgctctcacatctgcaaagacatggtgattggttttgagtgtgactgcaca
cctggacttcagctcattgaccacaagacctgcggcgacatcaatgagtgtatgaatccc
ggcatctgcagtcagatctgcatcaacctgaagggcggatacaagtgcgaatgtcacaac
gggtaccagatggatccgacaaccggcgtctgcaaagctgtcgggaaggaaccctgcctg
atcttcactaaccgcagagacatccgccgcctgggtctggagaggaaggagtacactcag
attgtggagcagcagaggaacaccgtggctctggatgcagactttaatcagcagatgatc
ttctgggccgacctgggccagagggccgtctatagcaccctgctggacaaacgcggggat
gtcggcacacacaacaaagtgattgacaacgtccagactcccgttggcatcgccttggac
tggatctataaaaatatctactggtctgatcttggcaccaaaaccatttctgtggccaac
ttcaacggaaccaagcagaaacttctgttcaacaaaggcctcaaagagccggcctccatc
gctgtggatccgctgtccgggtttctctactggtctgactggggcgagccagccaagatt
gaaaaatctggaatgaacggagtggaccgacaggttctggtggcgactgacatccagtgg
cctaatggcatcaccctggatctgatcaaaggcaggttgtactgggtcgactcgaagctt
cacatgctctgcagcgttgacctgaacggagacaacaggaagaaagtactccagtctcca
caatacctggctcatcccttcgctctcactgtgtttgaggatcgagtcttctggacagat
ggtgaaaataaagccatttacggcgcaaacaagttcaccggctctgacgtggtgacgctg
gccagcaacctgaatgatccccaagacatcatcgtgtaccacgagctgatccagctgtct
ggcacaaactggtgtgcagagaagggtgaaaacggaggctgtagctacatgtgtctgcct
gcaccgcaaatcaacaaacactctcccaaatacacctgtgtgtgtgcagagggtcaggag
gtggctgctgacggccaccgctgcagacccgaatattctaccaaaggtccctcaaaggat
gatgggaaagctctgacgcgccccccctcagaggcgaacgtgggcacgtcgatccaggtg
gactccacagccagagggtctgctgctgcatgggccatactgcccgtcttgctgctggcg
atggcggtggggggcggctacctgatgtggagaaactggcagctgaggaaccagaagagc
atgaactttgacaacccagtctacctgaaaaccacagaagaagacctcaacattgatatc
acacggcacggcgccaacgtgggtcacacctaccccgcgatctcgatagtgagcacagag
gacgatttatcatga
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