Pungitius pungitius (ninespine stickleback): 119226622
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Entry
119226622 CDS
T07626
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119226622 (chd1)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119226622 (chd1)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
119226622 (chd1)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
119226622 (chd1)
SLIK complex
119226622 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
119226622
NCBI-ProteinID:
XP_037340666
LinkDB
All DBs
Position
18:complement(16152961..16173399)
Genome browser
AA seq
1794 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSGSGSASGSASGSSSSSSSSSSQSGSSNSGSASDS
GSQSDSDTEKTKEKMEPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQHQQQQQQQQQQQK
RQSSSNSGSDEDSSSSDGSDTSSGSKRRRNSASSDSGSASGSASGSGSDSSAEDNSEETA
SDYEPSHKIKSRKPPTKMNYRNGKKSSNQKKKSQKCSSSEDEDDNYKKAASAGQRRQATV
NVSYKEDEELKTDSDDLVEVVGEDVPQPEEDEFETLERVMDSRIGRKRATGSVTTVYAVE
ADGDPNATFNNTKEPGEIQYLIKWKNWAHIHNTWETEETLKLQNVKGMKKLDNFKKKDQE
KKRWLKAASPEDIEYLNCQQELMDDLHSQYQLVERILGHSNQKSVAGYPDYLCKWQGLPY
SECSWEDGALIGRKFQKCIDDYMSRNQSKTIPSRDCKVLKQRPRFVPMKKQPSYIGGDGL
ELRDYQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFNDHQLYGPFLLVVPL
STLTSWQREIQLWAPQMNFVVYLGDISSRNMIRTHEWIHVHSKRLKFNILLTTYEILLKD
KSFLGNVNWAFIGVDEAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHF
IMPEKFHSWELFEEAHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMS
AIQKQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFLNRAEA
LQQLIRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLKSRQFLFQRLDGSIK
GEMRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH
RIGQKRQVNIYRLVTKSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAP
FNKEELSSILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQF
KVANFSMMDDEEIDIESERSHRSWDSIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQ
ISFNTGSGRQSRNRRYSGSDSDSPSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYK
KFGGPLERLDAIARDAELVDKSEHDLKRLADTVHNGCLRTLRENPCGQEKTSGGRRGKVK
GPTFRISGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDIEWGKEDD
SSLLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLA
KREAQKQAGTANSRKRRPRSKRSKSIKPTKPDEVMKSTSSDPPSDKRSDDDDEEEIEEEK
EVAPVQAPSRRNRADRVVEKDEEDEDEDPEQEEVSSSGERDLLEKEVKREKKEESWDLKD
TKELKEKKETKPLEVIHKQEESMEKIEIKAEVRERTKRASEVPLHITATGDNVLVSEESE
ELDQRTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSN
PEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRSINIHTFKHAD
IERLKDNSHQDDSSRDSYSSDRHPPSSRYHESSSSKERHSSESHRKTAGDSRKRPYSSFS
NGKDHRDHYRPDSRDRDRQDRFYNDGKHRKLEEFRSSRDHRQDVKDHSHSEHRSSYRYHS
DWQSEQRASASGPRSPRDQRSPYDSRSPMGHRSPFDYSSDHKSTPEQIWSSRKT
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgcagtgaggatgaaagtgtaagcaacagcagtggtgaatcaagtaattct
gacgatgaatctggttctggatcgggctcagcgtcaggctccgcttcaggctccagttcc
agctcctccagcagcagcagccaatcggggagcagtaattcaggtagtgcctccgactcc
ggcagccagtcagattctgacacagagaaaaccaaggagaagatggaaccgccaaataag
tcaaacatcgatggagctgagttctggaagtcaaacccaagtatcctagcagtgcaaaga
tcagctatgctcagaaaacaacaccaacaacaacaacagcagcagcagcagcagcagaag
agacaaagctcctcaaatagtggatctgatgaggactcttcaagtagcgatggatctgac
acatcaagtggatccaaaaggagaagaaattcagcctcctccgactctggatcggcctct
gggtctgcaagtggttctggatcagactcctcagcggaggacaacagtgaagaaactgca
tcagactatgagcctagtcacaaaatcaaaagcagaaagcctccaactaagatgaattat
cggaatgggaagaaaagcagcaaccaaaagaagaaatcccagaagtgttcttcctctgag
gatgaggatgacaactacaagaaagcggcgtctgcagggcaacgtaggcaggccacagtc
aacgtcagctacaaggaagacgaagaactgaagactgattcggacgacctggtggaagtt
gtgggtgaagatgtcccacaacctgaggaagacgagtttgaaacactggagagagtgatg
gacagcaggataggaagaaaaagagcaacaggaagtgtaactactgtatacgctgtggaa
gcagatggtgaccccaatgctaccttcaacaacaccaaagagcctggtgagatccagtat
ttgataaagtggaagaactgggcccatatccacaacacttgggagacagaggagacactg
aagttacagaatgtcaagggcatgaagaaactggacaattttaagaagaaggaccaggag
aaaaagagatggttaaaggcggcttccccagaggacatagagtatttgaattgtcaacaa
gagttgatggatgacctacactctcagtaccagctggtagagcgaatcttaggacattca
aaccagaagtcagtggctggttaccccgactatctatgcaagtggcagggtttaccgtac
tctgaatgtagttgggaagatggcgcgctgatcggcagaaagttccagaaatgcattgac
gattacatgagcagaaaccagtcaaagaccattccatccagagactgcaaggtgctcaaa
cagagacccaggtttgtgcctatgaagaagcagccaagttacataggaggggatggattg
gagctcagagactaccagttggacagtttgaactggatggcccactcctggtgcaaaggc
aacagttgcattcttgctgatgagatgggtttagggaagaccatccagacaatctccttc
ctcaactacctgttcaatgatcatcaactgtatggacccttcttgctggttgtgcctctc
tctacactcacctcctggcagagagaaatccagctgtgggctcctcagatgaattttgtg
gtctatctgggagacattagcagcaggaatatgatcaggacacatgagtggatccatgtc
catagcaagagactgaaatttaacatccttctcacaacgtatgagattcttctcaaagac
aagtcgtttttgggaaacgttaactgggccttcattggtgtggatgaggcgcaccgactg
aagaatgatgactccctcctctacaagaccatgatggacttcaagtccaatcacaggctt
ctgatcacaggaacgccactgcagaactccctgaaagagctctggtccctgctgcacttc
attatgcccgagaagtttcactcttgggagctgtttgaggaggcccacggtaaaggcagg
gactcaggctacaccagcttgcataaagagctggaaccctttttactgcgcagggtgaag
aaggatgtggagaaatctcttcctgccaaagtggagcagatcctccgagtggagatgagt
gctatccagaaacagtattacaaatggatcctgaccaggaactataaggctctgagtaaa
ggtaccaaaggcagcacatcaggcttcctgaacatcatgatggagttgaagaagtgctgt
aaccactgttacctcattaagccgccagaggacaatgagttccttaacagagctgaagcc
ttacagcaactgatccgcagcagtggaaagctagttctgttggacaagctgctggtgcgt
ttgaaggagcgaggccacagagttctcatcttctcccagatggtacggatgctggatatc
ctggctgattacctgaagagccgacagttcctcttccagcgattagatggctccatcaaa
ggggagatgaggaagcaagcgttggatcatttcaatgctgagggctcagaggatttttgc
ttcttgttgtcaacgcgtgctggtggtctgggtatcaatttggcatcggctgacacagta
gttatctttgactcagactggaacccccagaatgatcttcaggcccaggccagagcccac
agaattggacagaaaagacaggtgaatatctaccgcctggtgacgaagagctcagtggag
gaggaaattattgagagggcaaagaagaaaatggtgctggatcacctagtcatccagaga
atggacacaacagggaaaactgtcctgcataccggtgctgccccctccagttcagcacca
ttcaacaaggaggagctatcttccatcctgaagtttggtgcggaggagctttttaaagag
ccagagggtgaggagcaggaacctcaggaaatggatattgacgagatcctcaaaagagca
gagaccagggaaaatgatccaggaccctccacagtgggagaagaactgctttcccagttc
aaggtggccaacttctccatgatggacgatgaagaaatagatattgaatctgagcgtagt
catcggagttgggacagcatcattcctgaggaacagagaagaaggatggaggaggaggag
cgacagaaggaattggaggaaatctacctgctgccacgcatgcggaattgtgccaaacag
ataagctttaacaccggttcgggccggcaaagcaggaacaggaggtactctgggtctgac
agcgactccccctccgaccggaaaaggccaaagaaacgaggacggccccgaaccatccct
cgggaaaatatcaagggctttagcgacgctgagattcgaaggtttgtcaagagttataaa
aagtttgggggaccactggagaggttggatgctattgctcgtgatgctgagcttgtggat
aagtctgaacatgatctgaaacgcttagcggatacggttcacaatggctgtctgagaaca
ctacgagaaaacccatgtggacaagagaagacttcaggagggagaagagggaaggtgaaa
ggccctacattcaggatctctggagtccaggtgaatgccaagcttgttatctcccatgag
gaagagttggctccactccacaaggccattcctgctgaccctgaggagagaaagaagtat
atgattccctgccactcgaaggcagcacactttgacattgagtgggggaaagaggacgac
tccagcctcctcataggaatctatgagtacggatacggcagctgggagatgatcaagatg
gatccagacctcaatctcacacacaagcttctgccagatgaccctgacaagaagccacag
gccaaacagctccagaccagagcagactacctcatcaagctgctaagcaaggacctggcc
aaaagagaagcacagaaacaagcagggacagctaattcgcggaagaggagaccaagaagt
aaaagaagcaaaagtataaagcccacaaagccagacgaagtgatgaagagcacgtcctca
gatcctccatcagacaagaggtcggacgacgacgatgaggaggaaattgaggaggaaaag
gaggtggcaccagtacaggcgccaagcagacggaaccgagcagacagagtggtggagaag
gacgaggaggatgaagatgaggaccctgaacaggaagaagtgtcttcatcaggagaaagg
gacctcctcgaaaaagaagtcaaaagggagaagaaggaggagagttgggaccttaaagat
acaaaggagctaaaagagaaaaaagaaacaaagcctctggaagtgattcataaacaagaa
gagagcatggaaaagatcgaaataaaggccgaggtacgagaacgaacaaagagagcctcg
gaagtgccacttcatattacagcaactggggacaatgtgctggtgtctgaggaatctgag
gaactggaccagaggaccttcagtgtgtgtaaagagaggatgcggccggtgaaagcggcc
ctcaagcagctggaccggccggagaaagggctgtcggagcgcgagcagcttgaacataca
agacagtgcctcattaaaatcggagaccacatcacagagtgtctgaaggagtattctaat
cctgagcagatcaaacagtggaggaaaaacctatggatatttgtttctaaattcactgag
tttgacgccaggaaactgcataaactgtataagcacgcaatcaagaaaagacaagaaaac
gcccaggcaatggagcagaacactaggagcataaacatccacacctttaagcatgcagat
attgaaaggctgaaagacaactcgcaccaggacgatagcagcagggacagctacagctca
gatagacatccaccttcgagtcgctaccacgagagcagcagcagtaaggagagacacagc
tcagagtcccaccggaagacagctggagactctagaaagagaccgtactcctccttcagc
aacggcaaagaccaccgagaccactacagaccagacagcagggaccgagacagacaggac
agattctacaatgacggtaagcacaggaagctggaggagttccgctccagcagagaccac
cggcaggacgtgaaggatcattcccactcggagcaccgctcgtcctaccgctatcactca
gactggcagagcgagcaacgggcctcagccagcgggccccgctccccccgggaccagcgc
tcgccctatgactcgcgctcgcccatgggccatcgctctccttttgactactcgtcggat
cacaagagcacaccggagcagatctggagcagccgcaaaacataa
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integrated database retrieval system
