Pungitius pungitius (ninespine stickleback): 119226758
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Entry
119226758 CDS
T07626
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119226758
03041 Spliceosome [BR:
ppug03041
]
119226758
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
119226758
Spliceosome [BR:
ppug03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
119226758
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
RRM_ACIN1
RRM_Nup35
Calcipressin
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
119226758
NCBI-ProteinID:
XP_037340921
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All DBs
Position
18:1931136..1937009
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AA seq
388 aa
AA seq
DB search
MDDDQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDPYCFVEFYEYRHAT
ATIAAMNGRKILGKEVKVNWATTPTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFAPFGK
ISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTT
NETPNTKQLSFDEVVNQSSPSNCTVYCGGVTTGLTEQIMRQTFSPFGQIMEIRVFPDKGY
SFVRFNSHEAAAHAIVSVNGTSIEGYVVKCYWGKETTDMVSPIQQVQMPQQSAVSFAAAQ
PYSQWGQWYSNTAAQQIGQYVPNGWQVPSYGVYGQTWDQQGYNHLHAGAGWTGVGAVSNG
AMVEPGQGVNGAVLTNTAGMSAAGYHTH
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggacgatgaccagcccaaaaccctgtacgtggggaatctgtcccgggacgtgacagag
gccctcatcctggagttgtttggccagattggaccctgcaagagctgtaaaatgatagta
gatacggcgggtcatgatccgtactgctttgtggagttctatgagtatagacacgccacg
gccacaatcgcggccatgaacggtcggaaaatactgggtaaggaggtcaaggtcaactgg
gccacgacgccaaccagccaaaagaaagacacaagtagtcacttccacgtctttgttgga
gatttaagtcctgaaatcaccacagatgacataaaagcagcatttgctccgtttgggaaa
atatcggattgtcgagtggtgaaagacatggccacaggtaaatctaaaggctatggcttt
gtctccttcttcaacaaatgggatgctgagaacgccatacagcagatgggagggcagtgg
ttgggcgggaggcagatcagaaccaactgggccacgaggaagccggcgcctaagactacg
aacgagacacccaacactaagcagctatccttcgacgaggtggtcaaccagtccagcccc
agcaactgcaccgtctactgcgggggggtcaccaccggcctcacggagcaaatcatgagg
cagaccttctcaccttttggccaaataatggaaatccgtgttttcccggacaaaggctac
tcgtttgtgaggttcaactcccacgaagcggcagctcacgccatcgtgtcggtcaacggc
acgtccatcgagggctacgtggtcaagtgttactggggcaaagaaaccaccgacatggtc
agccccatccagcaggtacagatgccacagcagagcgcggtgagcttcgcggcggcgcag
ccctacagtcagtggggtcagtggtacagcaacacggccgcccagcagatcgggcagtac
gtgcccaacgggtggcaggtgccgagctacggcgtctacgggcagacctgggatcagcag
ggctacaatcatttacacgccggggccggatggacaggcgtgggcgccgtgagcaacggg
gccatggtggagccgggccagggggtcaacggggccgtgctcaccaacacggccggcatg
agcgccgccggctaccacacccactga
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