Pungitius pungitius (ninespine stickleback): 119226815
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Entry
119226815 CDS
T07626
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119226815 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119226815 (prpf4)
Spliceosome [BR:
ppug03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
119226815 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
PRP4
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_Vps41
Beta-prop_IFT140_1st
Ge1_WD40
WD_LRWD1
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
WD40_like
DUF7779
Beta-prop_Nup120_160
Beta-prop_WDR11_1st
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
119226815
NCBI-ProteinID:
XP_037341020
LinkDB
All DBs
Position
18:complement(450849..455625)
Genome browser
AA seq
505 aa
AA seq
DB search
MSDEEDSAPASKRTRVYYGSLEEKERERLSSEGRSGDGVKAGIKAGNINISSGETLEMEE
RVSERQQDALAAFEQRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERLRSVL
SVVGPDALKKSRRDEDRAKRSQDECQQTWYHEGSAYLKDARLWLAKYSLPKAMKRLEAAR
AHKEVAEATRAIRQQEQQNGLRNLNNFCSQIGDDRPISFCHFSPDSKMLATGSWSGLCKL
WSVPDCSLIRTLRGHSSHVGSVVFRPEAGVSIDQSDVSLASCAADGSVKLWNLESDEPVA
DIEGHSDRVSRVSWHPSGRFLGTTSYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHPDG
SLAATGGLDAFGRVWDLRTGRCIVFLEGHLREIYSVHFSPNGHHLATGSGDNTCKVWELR
NRKCLYTVPAHQNLVSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEGKVMA
VDVSPDGKLIATSSYDRTFKLWLSE
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgaggaggactcggctccggcctccaagcggactcgcgtctactacgggagt
ctggaggagaaggagcgggagcgcctcagctccgaggggaggagcggcgatggcgtgaag
gccgggatcaaggcgggaaacatcaacatctcgtcaggagagaccctggagatggaggag
cgcgtcagcgagaggcagcaggacgcgctcgccgccttcgagcagcggcgccgcgcccgt
cagatcaccgtgtccacagacgacgctgaggtgaaggccggcctgcgggcgctgggggag
ccaatcacgttgttcggagagggaccagctgaccggcgcgagagacttcgaagcgttttg
tctgtcgttggtccggatgctctgaagaaatccagaagggacgaagacagagccaagaga
tcccaggacgagtgccagcagacgtggtaccacgaaggctccgcctacctgaaggatgct
cgcctctggttggcaaaatactctctgccaaaagcgatgaagcgtctggaggctgcacgc
gctcacaaggaagttgccgaggcaacgagggcgatccggcaacaggagcagcagaacggt
ctgcggaatctgaacaacttctgcagtcagatcggtgatgatcggccaatcagcttctgc
cacttcagccccgactcgaagatgctcgccaccggctcctggagtggcctctgtaagctg
tggtccgtccccgactgcagcctgattcgtacactgagaggacacagctcccacgtcggc
tcggtcgtcttccgcccggaggccggagtctccatcgaccaatcagacgtcagcttggcc
tcttgtgccgccgacggttctgtgaagctgtggaacctagagagcgatgagccggtggct
gacattgagggtcacagcgaccgcgtgtcccgggtgtcctggcatccctccggcaggttc
ctgggaaccaccagctatgataactcgtggcgtctgtgggatctggaggtgcaggaggag
atcctccatcaggaaggtcacagcaaaggagtccacgacctccacttccaccccgacggg
tccctggctgctactggtggcctggatgcctttggtagggtgtgggaccttcggaccgga
cgctgcatcgttttcctggaaggacacctgagggagatttacagcgttcacttctcgccc
aacgggcatcacctggctacaggaagtggtgataacacctgtaaggtttgggagctgaga
aacaggaagtgtttgtacacagttcccgcccaccagaacctggtgtcggctgttcgcttc
caacccacagacggtcacttcctgctgacgggagcttacgacaacacggcaaaggtgtgg
agtcacccgggctggacgccgctgaagacgctcgccggccacgaggggaaggtgatggcc
gtcgacgtgtcacctgacgggaagctgatcgccaccagctcctacgacagaaccttcaag
ctgtggctgtctgagtga
DBGET
integrated database retrieval system
