Pungitius pungitius (ninespine stickleback): 119226868
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Entry
119226868 CDS
T07626
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppug03009
]
119226868 (ddx54)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119226868 (ddx54)
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
Pre-60S particles
Helicases
119226868 (ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
CMS1
DNA_pol3_chi
DRTGG
KH_SLS1_1
Motif
Other DBs
NCBI-GeneID:
119226868
NCBI-ProteinID:
XP_062414844
LinkDB
All DBs
Position
18:complement(6570407..6578188)
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AA seq
888 aa
AA seq
DB search
MAQRKKKLTKKRRHTSNREPEIEFDRGDHQLAAEIKDDDFPGMKLLRFPATSDCLSDVEP
DTRLLVRAQNKKKKKSGGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTVPVILDGKDIVAM
ARTGSGKTAAFLVPMFEKLKAPQAQSGARALILTPTRELALQTMKFTKELGRFTGLKTAL
ILGGDRMDDQFAALHENPDIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAD
QLQEVIRRLPDSRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSDQIKLSFFHLR
MDDKQALLLHLLRNVVKPQEQTVVFVATKHHVEYIKELLTLEGVECAYIYSALDQTARKI
NIGKFVHRRAMVLIVTDVAARGIDIPMLDNVINYNFPSKPKLFLHRVGRVGRAGRSGVAY
SMICPDEMPFVYDLHLFLGRPVQFATAEHSKDSEGVFGRVPQGILDDESSHLTTAHENSL
DLQNMLHVSENAYKQYLKSRPDPSPESFRRVKNTDLSSMAVHPLLGSGLEKMELERLHIV
DAIKGYKAKSTIFEINSNSKSQAGDVMRAKRSKDKRLVDKFSRQRESLAAESRLHQPVIP
PTPSITAADDDDFTHSAGDKEEEEDDIKEVFSVVVGAGKMRNLQEDEGHSNKRSRQSGKD
QDYYIPYRPKDFDSERGLSLGGEGTPFEQQASTAVLDLMGDEGSKLNQHKNIMKWDRKRK
RFVRDAGRDDQKKKLRLDSGQVIGNKKNKKNFYEEWKKKYKVNDGGDGSDGDGEGGGGRG
GVRGGRRPGGGRGRGGGGGRGGGRGRGRNPNFQSPVGQQQTPGGLRVRSELKSKEQILKQ
RKTDKKQQFLQSGGLKNRRSKNKKWVGEVKKSGFGRGDQKKGKMRKRL
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaggaagaagaaactgacgaagaaaaggagacacacgtccaacagagagccg
gagatcgagtttgaccgcggagaccatcaactggcggccgaaattaaggacgatgatttt
ccagggatgaaacttctgcgattcccggccacatccgactgcctgtcagatgtggagccg
gacaccaggctgctggtcagagcccaaaacaagaagaaaaagaagtctggaggctttcag
tccatgggtctcagttaccctgtgtataagggcatcatgaagaagggttacaaagtccct
actccgattcaaagaaagaccgtcccagtgattttggatggcaaggatatagtcgccatg
gctaggactggcagtggtaagaccgctgctttcctggtgccaatgtttgagaagttgaaa
gcgcctcaagcccaaagtggagccagggccctaatcctgacccccaccagagagttggcc
ctgcagaccatgaagttcacaaaagagttggggagatttaccggcctcaagactgccctg
atccttggtggagacagaatggatgatcagtttgccgctcttcatgagaatcccgacata
atcatcggtacccccggtcgcctcatgcacgttattcaggagatgaacctgaagctgcag
agtgtggaatacgtggtgtttgatgaggctgacaggttgtttgaaatgggttttgctgat
cagcttcaggaggtcatccggaggcttccagacagtagacagactctgctgttctctgcc
actcttcccaaactgctggtggagtttgctagagctgggctgacagaacccgtgttgatt
cgtttggatgtggattctaaactgagtgaccagatcaagctgtcatttttccatctgcgg
atggatgacaagcaggcgctgctgcttcatctgctgaggaacgtagtgaagcctcaggag
caaacggtggtttttgtggccaccaaacaccatgtagagtacatcaaggagctgctgact
ttagaaggagtggagtgtgcttacatctacagcgccctcgatcagaccgccagaaagatc
aatatagggaagtttgtgcaccgcagagccatggtgctgattgtgactgatgttgctgct
cgtggtatcgacatccccatgctggacaatgtcatcaactacaacttcccctccaagccc
aagcttttcttgcacagagttgggcgtgtgggacgtgctgggcgcagtggcgtagcctac
agtatgatttgtccagatgagatgccgtttgtctacgaccttcacctcttcctcggacga
cccgttcagtttgccacagccgaacactcaaaagattcagaaggcgtgttcggtcgggtc
cctcagggtatcctggacgacgaaagttcccatctgaccacggcccatgaaaactccctg
gacctgcaaaacatgctccacgtgtccgaaaacgcctacaagcagtatctcaagtcgcga
ccagacccctcaccggagtccttcagacgggtcaaaaacacagatctgtccagcatggcg
gtccatccactgctagggtctggtttggagaaaatggaactggaacgtcttcacatagtt
gatgccatcaaaggctacaaagccaaatcgacaatctttgaaatcaactctaatagtaag
agtcaggccggcgatgtcatgcgggccaagcgctccaaggacaagcggctggtggacaaa
ttcagcagacagcgcgagagcctggctgcagaaagccggctgcatcagcccgtcatcccc
cccacccccagcatcaccgctgccgatgacgacgatttcacacacagcgcaggcgacaaa
gaggaggaggaggatgatatcaaggaggtgttctctgtagtcgtaggagctggaaaaatg
agaaacctgcaagaagatgaaggacacagtaacaagagaagcagacagtcgggcaaggat
caggactactacatcccctacagacccaaagatttcgactctgagagagggttaagtctg
ggcggagagggcacccccttcgaacagcaggcctccacagctgtcctggacctgatgggc
gacgagggaagcaagctaaaccagcacaagaacatcatgaaatgggatcgtaagaggaag
cgctttgtgcgagacgcagggagggacgaccagaagaagaagctccgactggatagtgga
caagtcatcggaaacaagaagaacaagaagaacttttacgaggagtggaagaaaaaatac
aaggtcaatgatggaggagatggctcagacggcgatggagaaggaggaggaggaagagga
ggcgtacgaggtggacggaggccaggaggaggtcgtggtcggggcggcggcggtggtcgg
ggtggtggtcgtggtcgtggccgtaaccccaacttccagagtcccgtgggacagcagcag
acgcccggcggtctccgggttcgctcggagctgaagtcaaaggagcaaatcctcaagcag
cgcaagacggacaagaagcagcagttcctgcagagcggaggcctgaagaaccgccgcagc
aagaacaaaaagtgggtcggagaggttaagaagtccggttttggacgtggcgatcagaag
aagggtaagatgaggaagagactctga
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