Pungitius pungitius (ninespine stickleback): 119227025
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Entry
119227025 CDS
T07626
Name
(RefSeq) LOW QUALITY PROTEIN: neurofilament medium polypeptide-like
KO
K04573
neurofilament medium polypeptide (neurofilament 3)
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ppug04812
]
119227025
Cytoskeleton proteins [BR:
ppug04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type IV
119227025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Extensin_1
Filament_head
DUF1664
HC2
FeoC
Tup_N
Motif
Other DBs
NCBI-GeneID:
119227025
NCBI-ProteinID:
XP_037341369
LinkDB
All DBs
Position
18:complement(9743483..9748953)
Genome browser
AA seq
1514 aa
AA seq
DB search
MDTRTTGYGYSRSGGIPSSGFRSQSRSRASPGSTVTSSYKRSVNMPVSRMYSSTVHSSGD
SVDYGQTSMLNGDYRHANEKEQLQGLNDRFVVYIDKVHYLEQQNKQIEEEIHALRQKQVS
RSELGNHYDQELQELRSMLEQIHHDKAQIQLDTDHIEEDIQRLRDRFEEEARIREETEAI
IRVLKKDTGDSELVKSELDKKVQSLQDEIAFIRNNHEEEVSDLIAQIQASQVTVERKDLQ
KTDITEALREIRCELEGHSNQNLQQVENWFMCRFSKLTEAADQNKDAIKSARDEITDYRR
QLQSKTVELESIRGTRDSLERQLNDIEDRHNSDLSSLQETIHQLDNELKNTKWEMARHLR
EYQDLLNVKMALDIEIAAYRKLLDGEETHFSTFPYLHVTSYKDSKPKSDPPKLKVHHKFV
EEIIEEVKVEHEKSDIDEVLAEIAQDLSATLGGGGDEGEEEQGKDEGGEGDDMEEVVAAT
EGKVNFSKSTKEKEADEQGGDKNGEEEEEKEEENEPEQGEGGEVGDEGEQEAGAEEEDGD
QDKDAGGDKAIKSRGENEEKEKTDKVKESEKCVKWLGDGKAEDAVEVELPKKEAAMAEVA
MPEVETSEAAKPEVAKQEAEKSEIEKTQVAKSEEAKIDVAKPEVAKSEEAKIDVAKPKVG
KSEAAKSEVTKPESVKSESAKPEVAKPEVEKSEAIKIEVAESAKPEIAKSKSTDPEVEKL
EVAKSEATKEDVAKQESKKPEVEKPEVEKSEDIKIEVADSAKPEIAKSKAADPEVEKLEV
AKSEAAKSEVTKPESVKSESAKPEVEKPEVAKPEVEKSEAIKIEVAESAKPEIAKSKSTD
PEVEKLEVAKSEATKEDVAKQESKKPEVEKPEVEKSEDIKIEVAESAKPEIAKSKAADPE
VEKLEVAKSEAAKSEVTKPESVKSESAKPEVEKPEVAKPEVEKSEAIKIEVAESAKPEVE
KSEVKKLEVEKSEDSKIEVVESAKPEVAKSETVDPEVSKQEASKPEVEKSKAADPEVEKL
EVAMSEVAKSESAKPEVEKSKDADPEFEKLEVAKSEAIKADVAKQESTKPEVAKPELEKS
EDSKIEVVESAKPEVAKSKTVDPEVSNQEAADPEVEKLEVAKSEATKAEVAKQDVAKEDV
AKPEVEKPKVAKTEVAKSESAKPEVEESKAAKSEAAESESAKSEAAKPEVEKSEDAKSEA
TKAEVAKQEVAKEDVAKPEVEKPEVAKTEVAKSESAKPEVENPESAESEAAKPEVAKSKA
VDPEVSKQEASKQEVEKSKAADPEVEMAEAPKPHAKKEEASQIEESKPDSPNSKSPNSEI
HKALSPKSEIPRPDFLKSDSPKPASPKSESPKEGSPKPGSPEPSSLKTESTKSDSSKPES
PKAESPKTAKSEVPKAADKKSEEKRDPINDKDMEKKDDAKNVDEDKSSPEEKEKKDKGKD
DGVIANGVDESPVKEDVNQKVVVTKTXEDESKPITKSVTVTETMKEEVVQDKLVSTKKTE
KRSTQSIKQVIEGE
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atggataccaggacgaccggctacggctacagccgctccggcggtatcccgtccagcggc
tttcgctcccagtctcggtcccgagcaagcccgggctccaccgtgacctcgtcctacaag
agaagcgtgaacatgccggtgtccagaatgtacagctcaacggtgcacagctccggcgac
agcgttgactatggtcaaacctccatgctgaacggagactacaggcacgctaacgagaaa
gagcaacttcaggggctcaacgaccggtttgtcgtttacatcgacaaggtgcactacctg
gagcagcagaacaagcagatcgaggaggagatccacgcactgcgacagaagcaggtgtcg
cgctccgagctgggcaaccactacgaccaggagctgcaggagctgcgctccatgctggag
cagatccaccacgacaaggcgcagatccagcttgacaccgaccacatcgaggaggacatt
cagcggctcagggaccgctttgaagaagaggctcgcatcagggaggagacggaggccata
atccgcgtcctgaagaaggacacgggcgactcagagttggtgaagtctgagttggataag
aaagttcagtcgctgcaggacgagatcgccttcatccgcaacaaccacgaggaagaggtt
agtgacctcatcgcccagatccaggcgtctcaggtgaccgtggagaggaaagacctccag
aagacggacatcaccgaggctctgcgggagatccgctgtgagctcgagggccactcaaac
cagaacctgcagcaggtggaaaactggttcatgtgccggttctccaagctcaccgaggct
gcagaccagaacaaggacgccatcaagtccgcccgcgatgagataaccgactatcgccgc
cagctgcagtccaagacggtggagttggagtccatccgcgggacaagagactcactggag
aggcagctgaatgacatcgaggaccggcacaacagcgatctgtccagtctgcaggagaca
attcaccagctggataatgagctcaagaacaccaaatgggagatggctcgtcacctgcgc
gagtaccaggacctgctcaatgtcaagatggccttggacattgagatcgctgcatacagg
aaacttcttgatggtgaggaaactcatttcagcactttcccttatcttcatgtgacctcc
tataaagactctaagcctaaatcagaccctcccaagctgaaagtgcatcacaagtttgtg
gaagagatcatcgaagaggtaaaggtagagcatgagaagtcagacatcgacgaggtcctg
gcggaaatagcacaggatctgtctgccacgcttggaggtggtggagatgagggggaggaa
gagcagggtaaggatgaggggggagagggagatgacatggaggaagttgtagccgccact
gagggaaaagttaacttcagcaaatccactaaagagaaagaggcggatgaacaaggtggt
gataagaatggagaggaagaagaagaaaaggaagaggaaaatgagcctgaacaaggggaa
ggtggggaggtaggggatgaaggagaacaagaagctggtgctgaagaggaagatggtgat
caggacaaagatgcaggcggggacaaagcaatcaaaagcaggggtgagaatgaggaaaaa
gagaagacagacaaagtcaaagaaagtgaaaaatgtgtgaagtggttaggagatgggaaa
gcagaagatgctgtagaagtagaacttccaaagaaagaagctgcaatggcagaagttgca
atgccagaagttgaaacatcagaagctgcaaagccagaagtggcaaagcaagaagctgaa
aagtcagaaattgaaaaaacacaagttgcaaagtcagaagaagcaaagatagacgttgca
aagccagaagttgcaaagtcagaagaagcaaagatagatgttgcaaagccaaaagttgga
aagtcagaagctgcaaagtcagaagtcacaaagccagaatctgtaaagtctgaatctgca
aagccagaagttgcaaagccagaagttgaaaaatcagaagctataaagatagaagttgca
gaatctgcaaagccagaaattgcaaagtcaaaatctacagacccagaagttgaaaagcta
gaagttgcaaagtcagaagctactaaggaagatgttgcaaagcaagaatctaaaaagcca
gaagtagaaaagccagaagttgaaaagtcagaagatataaagatagaagttgcagattct
gcaaagccagaaattgcaaagtcaaaagctgcagacccagaagttgaaaagctagaagtt
gcaaagtcagaagctgcaaagtcagaagtcacaaagccagaatctgtaaagtcagaatct
gcaaagccagaagttgaaaagccagaagttgcaaagccagaagttgaaaaatcagaagct
ataaagatagaagttgcagaatctgcaaagccagaaattgcaaagtcaaaatctacagac
ccagaagttgaaaagctagaagttgcaaagtcagaagctactaaggaagatgttgcaaag
caagaatctaaaaagccagaagtagaaaagccagaagttgaaaagtcagaagatataaag
atagaagttgcagaatctgcaaagccagaaattgcaaagtcaaaagctgcagacccagaa
gtggaaaagctagaagttgcaaagtcagaagctgcaaagtcagaagtcacaaagccagaa
tctgtaaagtcagaatctgcaaagccagaagttgaaaagccagaagttgcaaagccagaa
gttgaaaaatcagaagctataaagatagaagttgcagaatctgcaaagccagaagttgaa
aagtcagaagttaaaaagttggaagttgaaaagtcagaagattcaaagatagaagttgta
gaatctgcaaagccagaagttgcaaagtcagaaactgtagacccagaagtttcaaagcaa
gaagcttcaaagccagaagttgaaaaatcaaaagctgcagacccagaagttgaaaagcta
gaagttgcaatgtcagaagtcgcaaaatcagaatctgcaaagccagaagttgaaaagtca
aaagatgcagacccagaatttgaaaagctagaagttgcgaagtcagaagctataaaggca
gatgttgcaaagcaagaatctacaaagccagaagttgcaaagccagaacttgaaaagtca
gaagattcaaagatagaagttgtagaatctgcaaagccagaagttgcaaagtcaaaaact
gtcgacccagaagtttcaaatcaagaagctgcagacccagaagttgaaaagctagaagtt
gcaaagtcagaagctacaaaggcagaggttgcaaagcaagacgttgcaaaggaagatgtt
gcaaagccagaagttgagaagccaaaagttgcaaagacagaagtcgcaaaatcagaatct
gcaaagccagaagtggaagagtcaaaagctgcaaagtcagaagctgcagagtcagaatct
gcaaagtcagaagctgcaaagccagaagttgaaaagtcagaagatgcaaagtcagaagct
acaaaggcagaggttgcaaagcaagaagttgcaaaggaagatgttgcaaagccagaagtt
gagaagccagaagttgcaaagacagaagtcgcaaaatcagaatctgcaaagccagaagtg
gaaaatcccgaatctgcagaatcagaagctgcaaagccagaagttgcaaagtcaaaagct
gtagacccagaagtttcaaagcaagaagcttcaaagcaagaagttgaaaagtcaaaagct
gcagacccagaagttgaaatggcagaagctccaaagccacatgctaagaaggaagaagct
tcccaaatagaggaatctaaaccagattctccaaattctaaatcccccaactctgaaata
cataaagctttatcccctaaatctgaaatacctcggcccgatttccttaaatctgattct
cccaagcctgcctctcctaaatctgagtcccccaaagaaggctcaccaaagcctggatcc
ccagaacccagctccttaaaaacagagtccaccaagtcagactcctcaaaaccagaatct
ccaaaagctgaatccccaaagaccgccaagtcagaggtcccaaaagctgctgataagaaa
tcagaggaaaagagagacccaataaatgacaaggacatggaaaagaaagatgatgccaag
aacgttgacgaagacaagagcagcccagaagagaaagagaagaaggacaaaggaaaagat
gacggcgtgatcgctaacggggtggatgaaagtcccgtcaaggaagacgtcaaccagaaa
gtggtggtcaccaaaactntagaagacgagtccaagcccatcaccaaatctgtcactgtg
accgagacgatgaaggaagaggtggtgcaggataagctggtatccaccaagaagacagag
aagcgctccacccagtccattaagcaggtgatagagggagaatga
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integrated database retrieval system
