Pungitius pungitius (ninespine stickleback): 119227074
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Entry
119227074 CDS
T07626
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppug03009
]
119227074 (ddx21)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119227074 (ddx21)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119227074 (ddx21)
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
Pre-60S particles
Helicases
119227074 (ddx21)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
119227074 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
tify
Motif
Other DBs
NCBI-GeneID:
119227074
NCBI-ProteinID:
XP_037341444
LinkDB
All DBs
Position
4:complement(15831462..15838934)
Genome browser
AA seq
744 aa
AA seq
DB search
MPTKMILETEDQAMDDNLDAVAEAKRLKKKNKEAKKLKNQMNLEEQEEQQDLDCEPPAPK
KKKKKDSLPVDQVNDHNKEDTLINDISADTPEKMKKKAEGDSEKKKKKNKKAEAETNGHS
IPDTPAPTPAQSSEDSASDSEKEMGETPEQKEGAFSNFRISQFTIDKLKARGATYLFDIQ
VKTFNPVYDGEDVIAQARTGTGKTFSFAIPLVEKLQSDSVALTRGRAPKVLVLTPTRELA
IQVAKDFKDITRKLSLACFYGGSSYNPQLDAIRNGIDILVGTPGRIKDHLQNNKLDLSKL
KHVVLDEVDTMLDMGFAEQVEEILSTSYEKDSDSNPQTLLFSATCPPWVYEVAKKYMRQE
CKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHSRTIVFCETKKDANE
LSTNASIKQSAQSLHGDIPQKQREITLRGFRNGAFEVLVATNVAARGLDIPEVDLVVQCS
PPKDVESYIHRSGRTGRAGRAGVCICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIK
SSSKDAVRFLDSVPVTAVAYFRASAEKLIEERGAVDALAAALAHISGATSLEQRSLLNSD
AGFTTVQMVCSQEMHNLGYAWKSIKEQLGEEFETHIQRMTYLKGKMGVCFDVPAGKVKEI
MDGWTDGRRWQLTVATELPELEEKQFSNRGGGFGGGNRGGGFRGGRGRGFGGGGGGRSNG
FRSGGFNSNVKGVHKRDFGEAFDY
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgccgacaaaaatgatcttagaaactgaagatcaagccatggatgacaacctggacgcc
gtcgcggaggctaaacgcctaaagaaaaagaacaaagaggcgaagaagctgaaaaaccag
atgaacttggaggagcaggaagagcagcaggacctggactgtgaacctccagcaccaaag
aaaaaaaagaaaaaagactcccttccagtggaccaagtcaacgaccacaacaaggaggac
acactcataaacgacatcagtgctgacacgccagagaagatgaagaagaaggctgaagga
gattccgagaaaaaaaagaagaagaataagaaagcagaggctgaaacaaacggacattcc
atcccagacacccccgcacccacaccggcccagtccagtgaagactcggccagcgacagc
gaaaaagaaatgggggagacaccagagcagaaggaaggggccttctccaacttcaggatt
tcccaattcactattgataaactgaaagctcggggagccacttacctgtttgacattcag
gtgaagacattcaatcctgtttacgatggcgaggacgtcattgcccaagcccgaacagga
acaggaaagactttctcatttgccatccctttggtggagaagctgcagtcggattcagtg
gcgttgactagaggccgggctcccaaggtcttggtgttaactccaactagagagttggca
atccaggtcgcaaaggacttcaaagacatcaccaggaagctgtctctcgcctgtttctat
ggaggcagctcatacaacccacagcttgatgcaatccgaaatggtatcgacattttggtg
ggcacacccgggcgcatcaaagaccacctccagaacaacaaactggacctctctaaactg
aaacatgttgttttggatgaagttgacacaatgttggacatgggatttgcagaacaggtg
gaagagattttgtcgacctcatatgagaaagattccgactccaacccacagacccttctg
ttttcggccacctgccctccctgggtttacgaggtagccaagaagtacatgagacaagag
tgcaaacacgtagatctgattggcaagaaaacacagaaagctgcaacaactgtagaacat
ctggccatagcgtgtcactggtcgcagcgtgcagctgtaatcggggatgtgatccaggtt
tacagcggcagccacagcaggaccatcgtgttctgtgaaaccaagaaagatgccaacgaa
ctttccacaaatgcatccatcaaacagagtgcccagtccctccatggtgacattcctcag
aaacagcgagagataacgctgaggggcttcaggaacggggcgtttgaggttctggttgcc
accaacgttgcagcccgtggattagacatccccgaagtcgacctggtggtccagtgttct
ccaccaaaggatgtggagtcatacatccatcgctctggacgtacgggccgagccggcagg
gctggagtctgcatctgtttctaccagaggaaagaggaggaccagctgcgctacgtagaa
aacaaagccggtatcacattcagacgagttggcgttcccactgcaaacgatatcatcaag
tcctcgagcaaggacgctgtcaggtttctggactctgttccagtcacagctgtcgcgtac
ttcagagcctcagcggagaagctgatagaggagagaggagcagttgatgcactggctgct
gccctggcacatatctctggagccaccagcctcgagcagaggtcactgctcaactctgat
gctggtttcaccactgtgcagatggtgtgttctcaggagatgcataatctgggttatgct
tggaaatccatcaaagagcagcttggagaagagtttgagacccacattcagagaatgacc
tacctcaaaggcaaaatgggcgtttgttttgatgtcccagctggcaaagtcaaagagatt
atggatggctggaccgacggtcgccgttggcaactgactgtagccacagagctcccagaa
ctggaggagaagcagttcagtaaccgcggaggaggcttcggtggtggaaaccgcggtgga
ggcttcagaggtggtagaggtcgtggttttggaggaggtggtggtggccgtagtaacggg
tttcgcagcggtggcttcaacagcaacgtcaaaggagtacacaaacgcgacttcggagaa
gcttttgattattga
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