Pungitius pungitius (ninespine stickleback): 119227219
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Entry
119227219 CDS
T07626
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119227219 (srrm1)
03015 mRNA surveillance pathway
119227219 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119227219 (srrm1)
03041 Spliceosome [BR:
ppug03041
]
119227219 (srrm1)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119227219 (srrm1)
Spliceosome [BR:
ppug03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
119227219 (srrm1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
119227219
NCBI-ProteinID:
XP_037341682
LinkDB
All DBs
Position
14:5467112..5476554
Genome browser
AA seq
854 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKVDDDKKEKDLRERAQSKSPRRRKTRSPSPRRRSP
AKRERKRSASRSPRRKASPVVGSSPPPPLMQLPTKPLEQLVESETLDRALPEAVIQETPS
TGDTVVEVVNPVPVTEVKEASAEKSLKKEERPRSREREKDSRRERPHQRSHSRTRRRRSR
SRSYSPRRRPSPRRRMSPRRRSPPRRGPTNSRNRHRRSPVRRRRSRSASSSGSSSSNSRS
PKKAVKKISTTPPRKPVHHPDNPVSPAGKDRRSPSPQARRGRGSTSPARSSGLKRKPGGR
GDSPPDNAKPRASEGSESDEDKNEKGATADSVQQRRQYRRQNRQTSSDTGSSSSEDEGPK
RPTAGPIARNGELRRRRSRTPSPRRRHRDGSPRKRRSPSPGRRRRTPSPPRRRRSPSPPR
RRSPSPPPRRRSPSPRRYSPPIQRRYSPSPLPPPKRKLSGSPMKRPSPAPKRRVSRSPKR
RSPPAPRRRTPPSSSPSRNRRSPMLPLTRPGRDNRSPVASRLSPSPANRGRGARGSASPQ
RRFDTAGSSPSNQRRQQSPSHGGKPIRRVSRTPEPRNNQRPSPSPHPLRRAPSRSVSPQP
AALKRPAPASASPSPSRSASGSPPPAKKASSGSGSQSPNKNSDVDGSGKKKKKKKEKKHK
KEKKHKKHKKHKKEKSGAPVAADRHENHGGEEDGESRKESDSEVDDSLDDLEKHLREKAL
RSMRKAQLSPSQMS
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggtacaagtgcggagcaagacaaccgtttcagcaacaag
cagaagaaactgctgaagcagctgaagtttgcagaatgtctcgacaagaaggtggacatg
accaaagtgaacctagaagtcatcaaaccatggattactcagcgagtgacagagattctg
gggttcgaggatgacgtcgtcatagagtttatatttaaccaactcgaagagaagcacccg
gatagcaagatgatgcagatcaacctgactggcttcctgaatgggaagaatgcccgggag
ttcatgagggacctatggccgctgctgctgagtgcccaggagaacattgccggcatcccg
tctgcttttcttgaacagaagaaggaggaaatcaaacagagacagattgaacaggagaaa
cttgcttctctgaagaaggttgatgatgataagaaggaaaaggacctcagagagagggct
cagtccaaaagcccaaggaggaggaagacccgatcgccgtccccccgccgaaggtcacca
gcgaagcgggaaaggaaacgtagcgcctcccgctccccaagacgcaaagccagtccagtt
gttggtagttcaccccctccacctctgatgcagctgccaacgaaaccgctggagcagctt
gtggagtcagaaacattagatagagccctgccagaagcagtcatccaagaaactccttct
accggggacacagttgtggaggtggtgaatccagtcccagtgactgaagtcaaagaagcc
tcagcagaaaagagcctgaagaaggaggagaggcccaggtctcgggagagagagaaggac
agcaggagggaaagacctcaccaacgctctcattcccgcactcgcaggcgacgctcccgt
tctcgatcttactccccacgcagaaggccgagtcccaggaggagaatgtctcctcgtcga
aggagcccccccagacgtggccccaccaactccagaaacagacacagacgctcccctgtc
cgcaggaggcgctctcgctccgcttcgtcttccggcagcagctcctccaactctcgctcg
cccaaaaaagctgtgaaaaaaatatctaccacgccaccccgaaagccggtgcaccacccc
gacaaccccgtcagccccgcggggaaggacaggcggtccccgtctccacaggccaggagg
ggccgcggctctacgtctccagccagatcatcaggtttaaagcgaaaacccggaggaagg
ggggattcaccacctgataatgccaagcctagagcttctgaagggtctgagtccgacgaa
gataaaaatgagaaaggggcaactgcagattcggtgcagcagcgacgtcagtatcgcagg
cagaatcgacagacttcttcagatacggggtcttcctcctccgaagacgagggacccaag
aggccaacagcagggccaattgccagaaacggggaactcagaaggagacgcagccgtacg
ccgtccccacggaggcgacacagggatggctctccaaggaaaagacgttccccatctcct
ggacgcagacggcgcacaccgtctcccccgcgccgccgcagatctccgtctccccctaga
agaaggtctccttctccacctccccgtcgtcgttctccatcccctaggcggtattctccc
cctatccagcgccgctacagcccctctcccctgcctccaccgaagcggaagctgtccggc
tccccgatgaaacgcccttctccggcgcccaagcggcgcgtctccaggtcgcccaagcgc
cgaagccctcccgctccaaggagacgcacgcctccctcctcgtctccgtccaggaaccgg
aggagccccatgttgcctctcacgaggccgggcagggacaaccgatcccccgtggccagc
cgcctctccccgtcccctgcgaaccgcggtcgcggcgcccggggttccgccagtcctcag
aggcgctttgacaccgccggttcgtctccatctaaccagcgaaggcagcagtccccttca
cacggcggcaagcccatccgcagagtgtcccgcaccccggagccccgcaacaaccagaga
ccatctccaagtccccaccctctgaggagagccccctccaggtccgtttccccccagcca
gcagctctgaaacgcccggcccccgcatccgcctccccctcgccgtcccgctcagccagc
ggttctccaccaccagccaagaaagccagcagtggttccggcagtcaatccccaaacaag
aattccgatgttgacggcagcggaaagaaaaagaagaagaagaaggaaaagaagcacaag
aaggagaagaaacacaagaagcacaagaagcataagaaggagaaaagcggcgcccccgtt
gctgcagacagacatgaaaaccacgggggggaggaggacggcgagtcaagaaaggaatca
gacagtgaagtagatgacagcttggatgatctggagaaacacctcagagaaaaggccctc
cgctccatgaggaaggcccagttgtctccgtcacagatgtcctga
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