Pungitius pungitius (ninespine stickleback): 119227278
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Entry
119227278 CDS
T07626
Symbol
copb1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119227278 (copb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119227278 (copb1)
Membrane trafficking [BR:
ppug04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
119227278 (copb1)
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
119227278 (copb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatamer_beta_C
Coatomer_b_Cpla
Cnd1
HEAT
HEAT_2
HEAT_EZ
Arm
MMS19_N
Motif
Other DBs
NCBI-GeneID:
119227278
NCBI-ProteinID:
XP_037341821
LinkDB
All DBs
Position
4:12188980..12197688
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVSSESEPPSEVSLKADLEKGEIKAKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKESELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVHTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAVKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKEHPTHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDTNEAAAADV
LEFVREAIQRFDNLRPLITEKMLEVFHAIKTVKIYRGALWILGEYCSTKDDIQSVMTEVR
RSLGEIPIVENEIKKETGEVKPDDEVSAAPAQKLVTEMGTYVTQSALSSSRPSKKEEDRP
PLRGFLMDGDFYVAASLATTLTKVALRYVAIVQDKKKQNSFVAEAMLIMVTVLHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRRSLSHMLTVRLEEEKLSQKKESEK
RNVTVQADDPISFMQLTAKSEMASKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNITDLNEYLQHILKSTNMKCLTPEKALSGFCGFMAANLYARSI
FGEDALANVSIEKPIHLGPDAPVNGHIRIRAKSQGMALSLGDKINLSQKKSNV
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgcagagaacgtttgttacactctgatcaatgtttcatctgagtcagaaccc
ccttctgaagtcagccttaaagctgatctagaaaagggggagatcaaggcaaagactgaa
gccctgaagaaggttatcatcatgatcctgaatggtgagaagctgccaggactgctgatg
accataatccgctttgtgctgccacttcaagaccacaccatcaaaaagctgctgctggtt
ttctgggagatagttcccaaaacaaccccagatggaaaactgctacaggagatgatcctg
gtctgtgacgcctacagaaaggacttgcagcatcccaatgagttcatccgtggctccact
ctgcgcttcctgtgcaagctgaaggagtcggagctgctggagcctctcatgccagctatc
cgggcctgcctggagcaccgccacagctatgtgcgccgcaacgccgtcctggcaatttac
accatctataggaactttgagcatctcatccctgacgctccagagttgatccatgatttt
ctcgtcaatgagaaagacgccagctgtaagagaaatgctttcatgatgctgatccatgca
gatcaggatcgagctctggattacctcagcacatgtattgaccaagttcacacttttggt
gacattctccagctggtcatcgtggagctgatttacaaagtctgccatgctaacccctct
gagcgcgcccggttcatccgatgcatctacaacctgctgcagtcctccagtccggctgtt
aagtatgaggctgccggcactcttgttaccctctccagtgctcccacagctgttaaggct
gctgcccagtgctacattgatttgattatcaaggagagcgacaacaatgtgaagctgatt
gttcttgatcgtctgattgaactgaaggagcaccccactcacgagcgcgtactccaggat
cttgtgatggacatcctgcgtgttctcagcactcctgacctggaagtcaggaagaagacc
ctgcagctggcgctggatcttgtttcatcgcgcaatgtcgaagagttggtgatcgtcttg
aagaaagaagtgatcaaaacaaacaacgtatcagaacatgaagatactgataagtacagg
cagctgttggtgcgcactctccactcctgcagtgtgcgcttccctgacatggcggccaat
gtcattcctgtgctgatggagttcctaagtgacactaacgaggcagctgctgccgatgtg
ctggagtttgtacgggaggccattcagcggtttgacaacttgaggcccctcatcaccgag
aagatgctggaagtctttcacgccataaaaactgtcaagatctacagaggagcgttgtgg
atcttgggagaatactgtagcaccaaggatgacatccagagtgtgatgacagaagtgcgc
aggtccttgggcgagatcccgattgtagaaaatgagatcaagaaagagaccggagaggtg
aaaccagatgatgaagtaagtgcggctccagcccagaagctggtgacagagatgggcacc
tatgtgacacagagcgctctcagctcgtccaggccttcgaagaaagaagaggatagacct
ccactgagaggcttcctgatggatggagacttttacgtggcagcttcccttgccaccaca
ctgaccaaagtggccttgcgctatgttgccatagttcaagacaaaaagaaacaaaactcc
tttgtggcggaggccatgctgatcatggtcactgtgctgcacttgggcaagtcctctctt
cccaagaagccgattacagacgatgacgtggaccgcatctcgctgtgcctgaaggttctg
tcagagtgctcgccacttatgaatgacattttcaacaaggagtgccgcagatccctgtca
catatgctgactgtcagactggaggaagagaagctatcacagaagaaagagtctgagaaa
cgcaacgtcacggtgcaggcagacgaccccatttctttcatgcagctgactgccaaaagc
gagatggcttctaaggaggaccagttccagctcagtctgctggctgccatgggcaacact
cagaggaaggaggctgctgatccactcgcatccaaactcaacaaggtgacccagttgacg
ggcttctcagacccagtttatgctgaagcctatgttcatgtcaaccagtatgacatcgtg
ctggatgtgctggtggtcaaccaaaccagcgacactctccagaattgcactcttgagctg
gccactttaggtgacctcaagttggttgagaagccttcacctctaactctggctcctcac
gattttgctaacatcaaggccaatgtcaaggtggcttccacggagaatggcattatattt
ggcaacattgtctatgatgtgtcaggagctgctagcgacaggaactgcgtggtcctcagt
gacatccacattgacatcatggactacatccagccagcttcgtgcacagatgcagaattc
agacagatgtgggcagagtttgagtgggaaaacaaggtaacggtgaacactaacatcacc
gatctgaacgagtaccttcagcatatcctcaagtccaccaacatgaagtgtctgactcct
gagaaggcactctctggcttctgcggcttcatggctgccaacctttatgctcgttctatc
tttggagaagatgccctggctaatgtcagcatcgagaagcccatccacctggggcccgac
gcacctgtcaacggacacatccgcattagagccaaaagtcaggggatggccttgagtctg
ggtgacaagatcaacctctcccaaaagaagtcaaatgtctga
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