Pungitius pungitius (ninespine stickleback): 119227304
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Entry
119227304 CDS
T07626
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119227304 (scaf8)
03041 Spliceosome [BR:
ppug03041
]
119227304 (scaf8)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119227304 (scaf8)
Spliceosome [BR:
ppug03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
119227304 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
CDC45
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
119227304
NCBI-ProteinID:
XP_037341882
LinkDB
All DBs
Position
14:complement(4986008..5003233)
Genome browser
AA seq
1433 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFILKCKPEYKV
PGLYVVDSIVRQSRHQFGTEKDVFAPRFSKNIIATFQQLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIAPPSITPVTSCSSAPVNNATPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERGEDSKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQKAMSGDGQDSIFGHENSVASAQSSSSQQQLPEPDNK
LDDTIDNQQQDMDLDEGPDGMEEEIFESDEKKNASTRSRTRSRSRSRSPKRRRSRSRSGS
RKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVG
QVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIGSK
IIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKLKLDDLEDFAEGGIIDQETVNDEWEAN
KNAEPAKEVSSQPLSAEPTAASNAQTETYNQPAAMMPVQLPVAQSVPNAVGLVPPTFPVT
MGIPPPGYGPPPPFIRAGFNASQPPPGFLQAAAMVSAATSLVQPSLAASQDAVNESPFSG
MIPPSGGFMAGVFNPVGVHGQQATNEKALQSADAMDAAAELTLQGMQNAVRSGMGLLGMH
PTASLTHQLHQSGLTGPRMSGLLPLDVRPGLLQPGAAGRFPLLMQPGPVHQAAGLLESSL
QAQARARAPFSQLDPFNRAPNHNNENISKPEDESSSGADEGKDQDYRFPPMEKHGTGLLR
TPPPEQREPLGGGGGGGAAGGGGAGGGGAGGGGGGGGGRPPLLQTPGTQPARTSLVGRLQ
ALAGFTPESRWNQTRGDFDERDGMRGGLQAPGGSKGFQEERPTPGQNFPSRFESRPGTAA
AGAAAAGVSGSGGAAGGPQAWNRSGGAVAAFDSELHQDLDERRRPWDRQRDRDERDFDFR
RDMNGNSNRHSRERERERERDRDRDRERGRDRTREHERDRDRDKERERERERERGGWTPL
LPLPTPLLPTPPLNPNLTLNQGKLLAPLKLNPQIQPRFQSPLLAQAQAKAPLSGLSQPPP
PPQAQAESPPPSQGQEAPSETCGAQSPPAAAQSPDESSGKARSPSTRAESSPPQPETPPQ
IDSPSQPETLSPARSRASASPDTETPSQASPPLEASSQDSPPVAFAHAASPLEETPSLGE
GDEDEDKDEEEEEEESSQEKASSPQPRWVNGGGMDNSTAAESTPESSAESSPRRSPEPPG
GASPGEASPGSALPESEPEPLASPEDVDNAQSEPEEDAASQPVVDTVTDTEGT
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagccttcaacaatgagctgtactcattaaatgagtacaagccaccc
atctccaaggccaagatgacccagatcacaaagtctggaatcaaagctataaaattctac
aagcatgtggtccagagtgtggagaagttcattctaaagtgcaaaccggagtacaaggtc
cccgggctgtatgtcgtcgactccatcgtcaggcagtcgcgtcaccagtttggcacggag
aaggacgttttcgccccgcgcttcagcaagaatatcattgcaacgttccagcagctctac
cgctgcccttcagatgacaagagtaagatcgtgcgagtcctgaacctgtggcaaaagaat
gcggtcttcaagagtgacatcatccagcccctgctggacatggcggcagggatcgccccg
cccagcatcacgcccgtcacgtcctgcagctccgctccagtcaataacgccacacctggc
accccggctaccccggctactccggccaacatagtccagggtctgccagactgggcttcc
cagatcaccaacacagacaccgtggctgctgtcgctcagatcctacagagtccccaagga
cagcagctgcagcagctggtgcagagtctccagatgcagcagcagaagccccagccgtcg
ctgctgcaggccttggacgccggcctggtggttcagctgcaggcgctgacggctcagctc
accgcggccgccactgcaaacagcctgaaccccctggagcagagggtgtcctcgttcaat
aagaagctgctgggtccattcgattttgggaatgattcagaacgcggggaagattccaaa
aaagactcttcttcgtctcagttgccgatggtgtcagagcccatcaacagctccctcttc
caccagctggccgagcagctacagcagcagaacctggaacagtttcagaagcagcttttg
gagcaccagcagaaggcgatgagtggagatgggcaggactcaatctttgggcacgaaaac
tctgttgcttctgctcagagcagcagcagccagcagcagcttcctgagccagacaacaag
ctggatgacaccatcgataaccaacagcaggacatggatctggacgagggccccgacggt
atggaggaggagatctttgagtcggatgagaagaagaacgcaagcacgcgttcccgaacg
cgctcacggtcgcgctctaggtctcccaagaggagaagatccaggtcccgctctggctcg
cgcaagcgcaaacaccgcaagcgctcgcgctcgcgctccagagagcgcaagaggaagtcc
tcgcggtcctactcgagcgaaaggcgcgctcgggaacgagagaaggagcggcagaagaag
gggcttcctcccatccgatccaaaactctcagtgtgtgcagcacgaccctgtgggttggc
caggtggacaaaaaggccactcagcaagacctgaccaatttgtttgaggagtttggccag
atcgagtccatcaatatgatccctcctcgaggctgtgcctacatctgcatggtccacaga
caggatgcgtaccgcgcacgccagaagctcagcacgggctccttcaagattggatccaaa
atcatcaagattgcatgggctctgaacaaaggggtgaagcaggagtacaagcagttttgg
gatgtagacctgggcgtcacctacataccgtgggagaagctgaagctggatgacctggag
gactttgccgagggagggatcatcgaccaggagaccgttaacgacgagtgggaagcaaac
aagaatgctgagccagccaaggaagtatcaagtcagcctttaagcgcggagcccacagca
gcatccaacgcgcagaccgagacctacaaccagccggccgccatgatgcccgtgcagctc
ccagtggcccagtccgttcccaatgccgtcggcttggtgccgcccaccttccccgtcacc
atgggcatcccgccgccgggctacgggccgccgccccccttcatacgggctggcttcaac
gcctcgcagcctccgccaggttttctgcaggcggccgccatggtctcagcagctacttcg
ttagtgcagccttcgttggcggccagccaagacgctgtcaacgaatcgccattcagtggt
atgattcctccgtccggcggcttcatggccggagtgttcaacccagtgggagtccacggt
cagcaggccaccaatgagaaggcgttgcagtctgcggacgccatggatgccgctgcggag
ctgaccctgcaaggcatgcagaatgcggtgcgcagcgggatgggcctcctcgggatgcac
cccaccgcttcgctcacccaccagctgcatcagtcgggtctgaccggaccgagaatgtcc
ggcctgctgcctctcgacgtgcgacccggcctcctccaaccgggggccgccggccgcttc
ccgctgctcatgcagccgggccccgtccaccaggccgctggcctgctcgagagttccctc
caggctcaagcccgcgccagggcccccttctcccagctggaccccttcaaccgggccccc
aaccataacaacgagaatatatccaagccagaagatgagtcctcctcaggagctgatgag
ggcaaagaccaggactaccgcttccctccaatggaaaagcacggcacgggcctgctgagg
acccctccaccagagcaaagggagcctcttggaggtggcggcggcggcggagcagcagga
ggaggaggagcaggaggtggaggagcaggaggtggaggcggaggaggaggaggcaggccg
cccttgctccagacgcccgggacgcagccagccagaaccagcctagtgggccgtctgcag
gcacttgccggcttcactcctgagagccgctggaaccagaccagaggggactttgatgag
cgggacggcatgcgggggggcctacaggcccccgggggctcaaagggcttccaggaagag
aggcccacgcccgggcagaacttccccagccgctttgaaagccgccctgggaccgcggca
gcaggggcagcggcagctggtgtttcgggcagcggcggggctgctggggggccgcaggcc
tggaaccgtagcggcggtgccgtcgcagctttcgacagcgaacttcaccaagaccttgat
gagcgaagacgcccgtgggacaggcaaagggacagagacgagagagattttgacttcagg
agggacatgaacggcaacagcaaccggcacagcagagagcgggagagagagcgcgaaaga
gaccgggaccgggaccgggagcgaggcagagaccgcaccagagagcacgaacgcgacaga
gaccgcgacaaagagagggagcgcgagagggagcgggagcgcgggggctggacaccgctc
ctccctctgcccacacctctgcttcccaccccgccccttaatcccaacctgaccctgaac
caaggcaagctgctcgcgccgctcaaattgaacccccagattcagccccgattccagtcc
ccgctgctggcccaagctcaggccaaggcaccgctctccggtctgagtcagccgccaccg
cccccccaagcgcaggccgagtctccgcctccatcgcagggccaggaagctccgtccgag
acgtgcggggcgcagtccccccccgcggcggcccagtcgccggacgagtcgtccggcaaa
gctcgaagcccgtcgactcgagccgagtcgtcgccgccgcagcccgagacccctccccaa
atcgactccccgtcccagcccgagactctgtcccccgcccggtccagagccagcgcttct
ccggacactgagaccccgagccaggcctcgccgccgcttgaggcctcgtcccaggactca
ccacccgtggccttcgcgcatgctgccagccccctcgaagagactccctctctgggggag
ggggacgaggacgaggacaaggacgaggaggaggaggaggaggagtcgtcgcaggagaaa
gcctcctcgccccaaccccggtgggtcaacggaggcgggatggacaatagcactgcggct
gaatctacgcccgagagctccgccgagagctccccccgccgctctcccgagccccccggt
ggagcctcccccggtgaagcctcccccggttccgcgctccccgagagtgagccggagccg
ctcgcctcccccgaggacgtagacaatgcacagagcgagcccgaggaggacgctgcgagt
cagccagtggtagacactgtcacagacactgaggggacataa
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integrated database retrieval system
