KEGG   Pungitius pungitius (ninespine stickleback): 119227327
Entry
119227327         CDS       T07626                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ppug04121]
    119227327 (hltf)
   03400 DNA repair and recombination proteins [BR:ppug03400]
    119227327 (hltf)
Enzymes [BR:ppug01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     119227327 (hltf)
Ubiquitin system [BR:ppug04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    119227327 (hltf)
DNA repair and recombination proteins [BR:ppug03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    119227327 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_3 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX DEAD zf-RING_2 ResIII zf-RING_5 RING_XB3-XBAT31 zf-C3HC4_4 zf-ANAPC11 Prok-RING_4 DUF5817 zf-rbx1 zf-Nse zf-RING_4 zf-RING_6 DUF1644
Other DBs
NCBI-GeneID: 119227327
NCBI-ProteinID: XP_037341930
LinkDB
Position
14:11088924..11097164
AA seq 962 aa
MSSRWWRFGWDRHSEVDLFSDRTDPDAETLSQAIRAAASEEPDADGSVLFGHLQGTVVGL
RYYTGLVNRGEMVGLVRQPQNQYDPNAVMVANIYGNQVGHIKRELAAAMAHIMDNNLAKV
EGVVHSGTKNSFNMPLMLSFWGREENKKAVMESMARRGYKLNMGGGKASGSNPNSQGACA
LPSKKGLTIPLTAAELKNAFDNLFDDLMESEDGEKQASESVGTRLLPHQKQALSWMCARE
NKSALPPFWERRGELYYNRLTCFSAKEIPERIRGGILADDMGLGKTLTTIALILTNFHKG
KPLPLEKCDEQPSPFKAKTKPEMASKLPGSTSAGSGSGSSDAAACSMPSTLSQVDVICAD
SADVGNKSENSTSKGKKKATKRKPINEASTFIEDLDFAAALGGTANTSLRKKKTATLTPS
ACVDFSMAESADDLSVRTTLIICPLSVISNWLDQFEQHVRADVKLNVYLYYGAERNRSKT
FLSSQDVVITTYNVLSADFGNKSPLHGVKWLRVVLDEGHVVRNPNAQMSKAVLDLKAQRR
WILSGTPIQNSVKDLWMLLAFLRLKPFDTREWWNRVIQRPVTQGDRAGLQNLQTLVKCIT
LRRTKGSEVNGRPLVSLPEKTVCVEQVELSQSEREEYELARNEGRSTIARYVTEGTVLRN
YADVLAILMRLRQHCCHPDLLAKASSDLAAAATPAEMRERLIEKLRLVLASGSDEECSVC
LDSVHLPVITHCAHVYCRPCIAQVISSEQETARCPLCRSEIKASELVEFPQEEMEEEKST
NPDKWRTSSKVQALMGNLLRLRCEDGSIKSLIVSQFTRFLTILETPLRKHGFSFVRLDGT
MSQKKRTRVIQEFQSAAADSPAIMLLSLKAGGVGLNLTAASHVFFMDPAWNPATEEQCID
RCHRLGQTRKVFVTKFIVKSSVEENMVKIQRQKQDLVEKDFGSKNPDRKTSRMDDIKALM
EM
NT seq 2889 nt   +upstreamnt  +downstreamnt
atgtcgtcccgttggtggcggttcggctgggacaggcacagcgaggtggacctcttctcg
gaccgcactgaccccgatgcggagaccctctctcaggccatcagggccgcagcttccgag
gagccggacgccgatggcagcgtgctgttcggccacctgcagggcacggtggtcggcctt
agatactacacggggctggtgaatcgaggtgaaatggtgggtttggtgagacagccccag
aatcaatacgaccccaatgcagtgatggtcgccaacatttatggcaaccaagtgggtcac
atcaagcgggagctggcagcagctatggcccacatcatggataacaatttggctaaagtt
gagggggtggtacactcgggtacgaaaaactccttcaacatgcccttgatgctgtcgttc
tgggggcgagaggaaaacaaaaaggcagtgatggaaagcatggcccgtcgcggatataag
ctcaacatgggaggaggcaaagcatcaggttcaaatccaaatagtcaaggtgcttgtgca
ttgccatctaaaaaaggcttgaccatcccactaactgcagcggagctgaagaatgcattt
gacaacctctttgatgacttgatggagagtgaagatggagagaagcaagcttctgagtct
gtgggcactcgtctcctgcctcaccagaagcaggcgctgtcctggatgtgtgcgcgggaa
aacaagtctgcgctgccacctttctgggagaggaggggcgagctctactataaccgcctc
acatgtttctctgccaaagaaataccagagagaatccggggggggattctggcagatgac
atggggctgggaaaaactctgacgaccattgctctgattctcaccaactttcacaaagga
aagcctctgcctttggagaaatgtgatgagcagccttcaccgtttaaagccaaaactaaa
cctgagatggcctccaaactgcctggaagcaccagtgcaggcagtggatcaggctctagt
gatgcagcagcttgttcgatgccctcaaccctttctcaggtggatgttatctgtgctgat
tcagccgacgtagggaacaagtcggagaacagtaccagcaaaggaaagaaaaaggccacc
aagcgaaagcccattaatgaggcctctacatttattgaggatctggactttgctgcagca
ctcggtggcacagccaatacaagcctaaggaagaagaaaactgccactctgacaccaagt
gcctgcgtggacttctctatggctgaaagtgcagatgacttgtcagtaagaacaactctc
atcatctgccccctctctgtgatcagcaactggctggaccagtttgagcagcacgtacgt
gctgacgtaaagctaaacgtgtatctgtattacggcgcagagcgtaatcggagcaagacc
tttctgtcctctcaggatgtggtcatcacaacctacaacgtcctctctgccgattttggg
aataagagtcctctccatggggtcaagtggttgagggtcgtgctggacgaaggacacgtc
gtacgaaaccctaatgcacagatgagtaaggcggtgcttgacctgaaagctcagcgccgc
tggatattgtcaggtactcctatccagaacagtgtgaaggacctgtggatgctgctggcc
ttcctgcggctgaagcccttcgataccagggagtggtggaacagagtgatccagagaccc
gtcactcaaggagaccgagccggcctgcagaaccttcagaccctggtgaagtgcatcacc
ctgcggcggaccaagggcagcgaggtgaacgggcgccccctggtgtctctgcctgagaag
acggtgtgtgtggagcaggtggagctgagccagtcggagagagaggagtacgagctggct
cgcaacgagggcaggagtaccatcgccagatacgtgactgaagggacagtcttgaggaac
tacgctgacgtgttggccatcctgatgaggcttcgacagcactgctgccaccctgatctg
ctggcaaaagcctcctcagacctggccgctgcagccacacctgcggagatgcgggagcgt
ctgatagagaagctgcggcttgtgttggccagcggctctgatgaggagtgctcggtctgt
ctggattcggtgcacctgcccgtcatcacgcactgcgcccacgtgtactgccggccctgc
atcgcgcaggttatcagcagtgagcaggaaacagcgcgctgtcctctctgtcgcagtgag
atcaaggctagtgaactggtggagtttccacaggaggaaatggaggaagagaaaagtaca
aaccctgataagtggaggaccagctcaaaggttcaggcgctgatgggaaacttgctcagg
ctgcgatgtgaggacggcagcattaagtcattgatcgtctcacagtttacacgcttcctc
accatactggagactccgctcagaaagcatggtttcagttttgtgcgtttagatggcacc
atgagccaaaagaagaggactcgagtgatccaggagtttcagagcgctgcagcagacagc
cctgccatcatgcttctgtcactcaaagctggaggggtggggcttaacttgactgccgcc
tcgcacgtgttcttcatggaccctgcctggaatccagctacagaggaacagtgtatcgac
cgctgccaccgcctgggacagactaggaaagtgttcgtcacaaagttcattgtgaaaagt
tcagtggaggagaacatggtgaagatccagaggcagaagcaggacctggtggagaaggat
tttggttccaaaaaccctgataggaaaacgtctcgtatggatgatatcaaagcgctgatg
gagatgtag

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