Pungitius pungitius (ninespine stickleback): 119227384
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Entry
119227384 CDS
T07626
Name
(RefSeq) LOW QUALITY PROTEIN: neuronal PAS domain-containing protein 3
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119227384
Transcription factors [BR:
ppug03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
119227384
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS_11
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
119227384
NCBI-ProteinID:
XP_037342025
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All DBs
Position
14:complement(870568..1013313)
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AA seq
1065 aa
AA seq
DB search
MIRIFPDFSVQVTASGAAGGGGGGGMLSGPPVGRVPVPGATNGSPQSAQGIAAYQQSDPY
WERPANAGSCSAARPKTLHLAGQQHTSSPWLQALRKEKSRDAARSRRGKENFEFYELAKM
LPLPGAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKAIGTQRRRS
HSAVASEIFEPHLGSHILQSLDGFVFALNKEGRFLYISETVSIYLGLSQVELTGSSVFDY
VHPGDHVEMAEQLGMKLPPGRGLSLSQGNVNEDGASSASSSSPSETPEPVESSSPSLLAA
DNLLERSFFVRMKSTLTKRGVHIKSSGYKVIHVTGRLRIRMALTHGRSVPNQIIGMVVVA
HALPPPTINEVRIDCQMFVTRVNMDLKFIYCENRISDYMDLAPADVVGRRCYQFIHAEDV
EGIRESHLDLINKGQCVTKYYRWIQKSSGYIWIQSSATVAINAKNANEKNVIWVNYVLSN
HEYKDTPMDLAQLPPLPEKTSESSETSDSESESKETSDNENGKSEGKPSSQTEREDPEME
SRRQTGQPHRSSEQEVKRQEEGDSSSNPESQESDDSLEASDGEAEEQEEARRGAGGGDGS
DGGRLGRLAALGGLGGLGAIGGLGSLGGLHIKVEHYGEGEDAQLHSSLTSSSEEEEEDEE
EEEEGGEVQECDSDGGGKLQKGRKRRKVQKWDGSRGRRLRLSPPSADSPVALGDAAALVD
PSEAAPRRLRPPARPRRSPPSGLKIKTEMAEPINFDNDSSIWNFPPNREIHRNESPYSMT
SKPGPPPGSNEGFPSPQGGSLQGAIPDSVLTPPGAEGGSGGARKPPYNGTSSAPPSAAGL
APPSNSSSADPLSPPLSASPRDKQQGTPTPTSSSSSSSSTTSSSSALLYSGDLEALQRLQ
AGNVVMPLVHRVTGVTLASTGATAPSRVYTTGTIRYAPADVTLAMAQGNLLPNAAMNFVD
SSGFGLDPKTPMEMLYHHVHRLNMSAAAVASAGPFAGSTGAGVGNGALGGQMPTAANVFT
TAEGLFSSLPFPVYSNGIHGNGIHGNGIHGNGIHAAQTALERKED
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgatcaggatcttcccggatttcagcgtccaggtgacggcttcgggagccgcaggcggc
ggcggaggcggcgggatgctgtcgggacccccggtgggtcgcgtgccggtccccggagcc
acgaacgggtccccgcagagcgcgcagggcatcgccgcctaccagcaaagtgacccctac
tgggagcggccggccaatgcaggcagctgctccgccgcgcggcccaagaccctccacctg
gccggccagcagcacacctcgtcgccatggctgcaggccctgaggaaggagaagtcccgg
gacgcggcgcgctcgcggcgggggaaggagaactttgagttctacgagctggccaagatg
ctgccgctgccgggcgccatcaccagccagctggacaaggcgtccatcatccgcctcacc
atcagctacctgaagatgagggacttcgccaaccagggggacccgccctggaacctgcgc
atggagggcccgccccccaacacctccgtcaaagccatcggcacacagcggaggaggagt
cacagcgccgtcgcctcggagatcttcgagcctcacctgggcagccacattttacagtct
ctggacgggtttgtttttgcactaaacaaggagggacgcttcctctacatctctgagacc
gtctccatctacctgggactgtcgcaggtggagctgacgggcagcagcgtcttcgactac
gtccacccaggagaccacgtggagatggcggagcagctgggcatgaagctccccccgggc
cgaggcctgtccctgtcccaggggaacgtcaacgaggacggggcctcctccgcctcctcc
tcctcgccctcggagacgccggagccagtggagtccagcagtccgagtctcctggccgcc
gacaacctgctggaacgatccttcttcgtgaggatgaagtcgacgctcaccaagagagga
gtgcacatcaagtcctcaggatacaaggtgatccacgtcacggggcgcctgcgcatcagg
atggctctgacgcacggccgctccgtgcccaatcagatcatagggatggtggtggtggct
cacgccctgcccccccccaccatcaacgaggtccgcatcgactgccagatgttcgtgacc
cgggtcaacatggacctcaagttcatctactgcgagaacaggatcagtgactacatggac
ctggcgccggcggacgtggtgggcaggaggtgctaccagttcatccacgccgaggacgtg
gaggggatccgagagagtcacctggacctaataaacaagggtcagtgtgtgacgaagtac
taccggtggatccagaagagcagcggttacatctggatccagtccagcgccaccgtcgcc
atcaacgccaagaacgccaacgagaagaacgtcatctgggtcaactacgtcctgagcaac
cacgagtacaaagacacgcccatggacctcgcccagctgccccccctgcccgagaagacc
tccgagtcctccgagacctctgactccgagtccgagtccaaagagacctccgacaacgag
aatggcaagtcggaggggaagccgagcagccaaacagagcgcgaggacccggagatggag
agccggcgccagaccggccaaccgcaccgctcctccgagcaggaggtgaagcgccaggag
gagggcgacagctccagcaaccccgagagccaggagagcgacgacagtctggaggcctcg
gacggggaggcggaggagcaggaggaggccaggcgaggagcaggaggcggagatggaagt
gatggcggcaggctcgggaggttggccgcgctgggaggattgggaggactgggcgccatc
ggaggtctgggcagtctgggcgggcttcacattaaggtggagcactacggcgaaggggaa
gacgcgcagttgcacagctcactaacgtcttcgtccgaggaggaggaggaggacgaggag
gaggaggaggaaggaggagaagtgcaggagtgcgacagcgacggcggcgggaagctgcag
aaggggcggaagaggaggaaagtgcagaagtgggacgggtcccggggcaggagactccgc
ctctccccgccaagcgctgacagccccgtcgccttgggagacgcggccgcgctggtggac
ccctccgaggccgcgccccgccggctccgccctcctgctcgcccccgtcgatcgccgccc
tcgggcctgaagatcaagacggagatggcggagcccatcaacttcgacaacgacagcagc
atctggaacttcccgcccaaccgggagatccaccgcaacgagtcgccgtacagcatgacc
tccaaaccggggccgccgccgggctccaacgagggcttcccctcgccgcaggggggctcc
ctgcagggcgccatccccgactccgtcctcacccccccgggggcagagggaggctcgggg
ggagcgaggaaacctccctacaacggaacttcctctgcgccaccctctgccgccggcttg
gcgcctccctccaacagctcctcggccgaccccctgtcgccgccgctctccgcctccccg
cgggacaagcagcaaggcacccccacccccacctcctcctcctcctcctcctcctccacc
acctcctcctcatcggcccttctgtactccggcgacctggaggcactgcagcgcctgcag
gccggcaacgtggtgatgccgctggtccaccgggtcacgggggtcaccttggcctccacc
ggcgccacggccccgtcgcgggtctacaccaccggcaccatcaggtacgcgccagccgac
gtcaccctcgccatggcgcaagggaacctcctccccaacgccgccatgaactttgtagac
agctcgggcttcggcctggaccccaagacccccatggagatgctgtaccaccacgtgcac
cggctcaacatgtcggcggcggcggtggcgtcggccgggcccttcgccggctccacgggg
gccggcgtggggaacggcgccctggggggccagatgcccacggcggccaacgtgttcacc
acagcggaggggctgttctcctccctgccgttcccggtgtacagcaacgggatccacggc
aacgggatccacggcaacgggatccacggcaacgggatccacgccgcgcagaccgccctg
gagaggaaggaggactga
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