Pungitius pungitius (ninespine stickleback): 119227738
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Entry
119227738 CDS
T07626
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03420
Nucleotide excision repair
ppug04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119227738 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
119227738 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppug04121
]
119227738 (ddb1)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119227738 (ddb1)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
119227738 (ddb1)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
119227738 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
119227738 (ddb1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
119227738
NCBI-ProteinID:
XP_062417870
LinkDB
All DBs
Position
4:23267790..23301461
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACVTGHFTSADDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQTGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDLGSYVGVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QESKALVSQWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQIGTTEMEHEVAC
LDITPLGEAGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSNSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGTVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtataactacgtggtaacagcccagaagccgacggcggtgaacgcctgcgtcaca
ggtcacttcacctccgctgacgacctcaacctgctcatagcgaagaacacccggctggag
atctatgtggtgacggcggagggcctaaggcccgttaaggaggtcggcatgtacgggaag
attgctgtcatggagctcttcaggccgaagggcgagagcaaagacctgctgttcattctc
acatccaagtacaacgcctgcatccttgaatacaaacagaccggggagagcatcgacatc
atcactcgcgcccacggaaacgtccaggatcgtatcgggcgcccgtcagaaactggtatt
atcggcatcgtggacccagaatgccgcatgattggactgcggctgtacgacgggttgttc
aaggtgatcccactggaccgggacaaccgcgagctcaaggccttcaacatccgactggag
gagctgcaggtcatcgacgtgcatttcctgtacggctgccaggccccgacggtctgcttc
atctaccaggacccccagggacgccatgtgaagacctatgaagtttccttgagggagaag
gagttcaacaagggcccctggaaacaggagaacgtggaggccgaggcctccatggtcatc
ccagtgccggagccatttggtggcgctatcatcataggccaggagtccatcacctaccac
aacggagataaatacttggccattgcaccaccgaccatcaagcaaagcaccatcgtctgt
cacaaccgggtggaccccaacggctctcgctacctgctgggcgacatggagggacgcctg
ttcatgctgctgctggagaaggaggagctgatggacggcacggtggcgctcaaagacctg
cacgtggagctgctgggggagacgtccatcgccgagtgtttgacctacttggataacggc
gtggtgttcgtgggctccagactgggagactcccagctggtgaagctcaacgtggacagc
aacgacctggggtcctacgtgggggtgatggagaccttcaccaacctggggcccatcgtg
gacatgtgtgtggtggacctggagaggcagggacagggacagctggtcacgtgctccggg
gcgttcaaggagggctccctccgaatcatccgcaacggcatcgggattcacgagcacgcc
agcatcgacctgccgggaatcaaaggtttgtggcctctgcgctctgaggccggcagggag
acagacgacatgctggtgctgtccttcgtgggtcaaacacgagtgttgatgctgagtggc
gaggaagtggaggagacggagcttcccggcttcgtggacaaccagcagacgttttactgc
ggcaacgtggctcaccagcaactcattcaaatcacgtcgggctcggtgcgcctggtgctc
caggagagcaaggcgctggtgagccagtggaaggagccgcagggcaggaacatcagcgtg
gccgcctgcaaccacacccaggtggttctggccgtgggacgagccctctactacctgcag
atcctggcgggagagctgaagcagattggcaccacggagatggagcacgaggtggcctgc
ctggacatcactcccctgggggaggcgggcggcgagtcccccctctgcgccgtgggactg
tggaccgacatctcggcccgcgtgctcaagctgccttgcttcaccgccctgcacaaggag
atgctgggcggagagatcatccctcgctccatcctaatgaccaccttcgagggcagctac
tacctgctgtgcgcgctgggagacggcgccctcttctatttcggtctggacctgcagact
ggcgccctgagcgagcggaagaaggtgaccctcggcacgcagcccaccgtgctgcgcacc
ttcaggtccctctccacctccaacgtcttcgcctgctccgaccggcccaccgtcatctac
tcgtccaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactacatgtgc
cccctcaactctgagggctaccccgacagtcttgcgttggccaacaacagcacgctgacc
atcggcaccatcgacgagatccagaaactccacattcgcaccgtccccctctacgagtcc
cccaggcggatctgttaccaggaggtttcccagtgtttcggggttctatccagcagggtg
gagatccaggatgtgagcggcaccacatctgccgtgcgccccagcgccagcactcaggct
ctttccaacagcgtgagctccagcaagctcttccccagcagcacttctccccacgagacg
tccttcggcgaagaggtggaggtccacagtctgctggtggtggaccagcacacctttgaa
gtcctccacgcccatcagttcctccccagcgagtacgcgctcagcatggtgtcgtgtcgc
ctgggaaaagacccgtcggtgtacttcatcgtcggcaccgccatggtgtacccggaggag
gcggagcccaagcagggacgcatcatcgtcttccactacacagacgggaagctgcagacc
gtggctgagaaggaggtgaaaggagccgtctattccatggtggaattcaatggcaaactg
ctcgccagcatcaacagcacagttcgcctctacgagtggacggcggagaaggagctgagg
accgagtgcaaccactacaacaacatcatggccctctacctgaagaccaagggggacttc
atcctggtgggggacctgatgcgctccgtcctgctgctggcctacaagcccatggagggc
aactttgaggagattgcacgtgactttaatccgaactggatgagcgccgtggagatcctg
gacgacgacaacttcctgggggcggagaacgccttcaatctgtttgtctgccagaaggac
agtgcggccactacggacgaggagcggcagcacctgcaggaggtgggggtcttccacctc
ggggagttcgtaaacgtcttctgtcacggctcgctggtgctgcagaacctcggggagagc
tccacgcccacccagggctccgtgctcttcggcaccgttaacggcatgattggtacggtg
acctcgctctccgagggctggtacagcctcctcctggacctgcagaaccgcctcaacaag
gtcatcaagagcgtgggcaagatcgagcacagcttctggaggtccttccacacggagagg
aagacggagcaggccaccgggttcatcgacggggatctgatcgagagcttcctggacctc
ggccgggccaagatgcaggaggtggtcagcactttacagatcgatgacggcagcggcatg
aagcgcgaggccacggtggacgaggtcatcaagatcgtggaggagctgacgaggatccac
tag
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integrated database retrieval system
