Pungitius pungitius (ninespine stickleback): 119227895
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Entry
119227895 CDS
T07626
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03082
ATP-dependent chromatin remodeling
ppug03083
Polycomb repressive complex
ppug04110
Cell cycle
ppug04330
Notch signaling pathway
ppug04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119227895
03083 Polycomb repressive complex
119227895
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
119227895
04350 TGF-beta signaling pathway
119227895
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
119227895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppug03036
]
119227895
Enzymes [BR:
ppug01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
119227895
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
119227895
HDAC complexes
Sin3A-HDAC complex
119227895
BRAF-HDAC complex
119227895
REST complex
119227895
SHIP complex
119227895
MiDAC complex
119227895
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
119227895
Heterochromatin formation proteins
Other heterochromatin formation proteins
119227895
Chromatin remodeling factors
NuRD complex
119227895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
119227895
NCBI-ProteinID:
XP_037342981
LinkDB
All DBs
Position
14:complement(5438130..5442634)
Genome browser
AA seq
490 aa
AA seq
DB search
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSGGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFRPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDTSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEEDPNKRISIRAHDKRIACEEE
FSDSEDEGEGGRRNAASFKKVKRAKTEGEKEGEEKEKKGEEETKEVKEEEKVPEEEKMDT
SKPKEESKTP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttacttctcaaggaacaaagaagaaagtttgctactactacgacggtgatgtt
ggaaactattactatggccaggggcaccccatgaagccccaccgtatccgcatgactcac
aacctgttgctcaactatgggctctacagaaagatggagatatatcgtccgcacaaagcc
agcggagaagagatgacaaagtatcacagcgacgattacatcaaattcctccgttcgatt
agaccggacaacatgtcggagtacagcaaacaaatgcagagatttaacgtgggggaggac
tgtccagtgtttgacggtttgtttgagttctgccagctctcaggagggggctccgtcgct
ggtgcggtgaagttgaacaagcagcagacagacatcgctatcaactgggccggaggcctg
catcacgccaagaagtccgaggcctctgggttttgctacgtcaacgacatcgtactcgct
attctggagttactgaagtaccaccagagagtcctgtatatagatattgacatccatcac
ggagacggtgtggaggaggccttctacaccacagaccgggtcatgactgtttccttccac
aagtacggggagtacttccctggcactggcgacctgagggacatcggagccggtaagggt
aaatattacgctgtgaattacccactgagggacgggatcgacgatgagtcgtatgaagcc
atcttcagacctatcatggccaaggtgatggagatgtaccaacccagcgcagtggttctg
cagtgtggagccgattctctgtcaggagaccggcttggttgctttaacctcaccatcaaa
ggccatgccaagtgtgtggagtatatgaagagtttcaacctgccactgctgatgctgggt
ggaggaggctacaccatccgtaatgtggcgcgctgctggacatacgagactgctgtggcc
ctcgatacctccatccccaacgagctcccatacaacgactactttgagtactttggacca
gacttcaagctgcacatcagcccctccaacatgaccaatcagaacacaaacgattatctg
gagaagatcaagcagcgcttgtttgagaacttgcgtatgttgcctcacgcgcccggggtc
caaatgcaggccatcccagaggacgccgtgcaggaggacagcggcgatgaggaggaggag
gaccccaacaaacgcatctccatccgcgctcacgacaagaggatagcgtgtgaggaggag
ttctctgactcggaggatgaaggcgaaggaggccgcaggaacgcagccagcttcaagaaa
gtcaagcgagccaaaaccgaaggagagaaagagggagaagaaaaagagaagaaaggtgag
gaggaaacaaaagaagtaaaagaagaggagaaggtgccagaggaggagaaaatggacacc
tcaaagccaaaagaggagtccaagacaccctga
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