Pungitius pungitius (ninespine stickleback): 119227959
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Entry
119227959 CDS
T07626
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03015
mRNA surveillance pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119227959 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
119227959 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119227959 (pabpc4)
03041 Spliceosome [BR:
ppug03041
]
119227959 (pabpc4)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119227959 (pabpc4)
mRNA cycle factors
Stress granule specific factors
119227959 (pabpc4)
Spliceosome [BR:
ppug03041
]
Complex C
Other components
Complex C specific factors
119227959 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_occluded
RRM_10
Nup35_RRM_2
RBD_RDR6
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
119227959
NCBI-ProteinID:
XP_037343075
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All DBs
Position
14:complement(5426648..5434457)
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AA seq
627 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGDDMTDDQLKEHFDKYGKTLSVKVMRDPSGKSRGFGFVSYEK
HEDANKAVEDMNGNELNGKTVFVGRAQKKMERQTELKRKFELLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANTIVNQFQPASGYFMPAVPQAQNRTT
YYAPNQVAQMRPNPRWQQQGGRGQGGYQGIPSSLRQPGPRGSMRHMSPGGGAQGPRASGQ
AMGPRPPMGVPGPRAMPPYKYATGVRNPNPQMVQPMALQQAQPAVHVQGQEPLTSSMLAA
APPQEQKQMLGERLFPLIQSMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKVGSIDTTVAAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgaccgggagttatccgatggcttccctctacgttggcgacctgcacccc
gacatcacggaggctatgctgtacgagaagttcagcccagccggaccggtgctctccatt
cgggtgtgccgcgacatgatcacccggcgatccctcggatacgcgtatgtgaacttctct
caacccgctgacgccgagagagccctggacaccatgaactttgacgtggtgaaagggaag
ccaatcagaatcatgtggtcgcaaagagacccctccctcaggaagtccggggtgggcaac
gttttcataaagaacctcgacaagtccattgacaacaaagccctgtacgacaccttctcg
gcctttggcaacatcctctcctgcaaggtggtgtgcgatgaaaacggctccaagggctac
gcctttgtccactttgagacgcaggacgctgccgatcgagccattgagaagatgaacgga
atgcttctgaatgaccgcaaggtgtttgtgggtcgtttcaaatcacgcaaggaacgggag
gctgaacttggtgccagagccaaggagttcaccaacgtctacattaagaactttggagac
gatatgaccgatgaccagcttaaggagcattttgacaaatatggtaaaacactcagcgtg
aaggtgatgagggacccctccggcaaatccagaggctttggattcgttagttacgagaaa
cacgaggacgccaacaaggctgtggaggacatgaatggcaacgaactcaacggcaagact
gtgtttgtgggccgggctcagaagaagatggagcggcagacggagctgaagaggaagttc
gagctgctgaaacaagagaggatcagtcgttatcagggtgtgaatctctacattaagaac
ctggatgacaccatagatgacgagaaactgcgcaaggagttctctccattcggatcaatt
acaagcgccaaggtgatgctggaggagggtcgctccaagggcttcggctttgtctgcttc
tcgtcccccgaggaggccaccaaggcggtgacggagatgaacggacgcatcgttggctcc
aagccgctctacgtggctctcgctcagcgcaaagaggagcgcaaagcccacctcaccaac
cagtacatgcagcgcatagccggcatgagggccatgccggctaacaccatcgtcaaccag
ttccagcccgccagtggctacttcatgcccgccgtgcctcaggcccagaatcggactaca
tactatgcacccaatcaggtggcccaaatgcgacccaacccacgatggcagcaacaaggg
ggcagaggtcaagggggttaccaagggatacccagctcgctgcgtcagccggggccccgt
ggcagcatgagacacatgagtcccgggggcggcgcccagggcccacgagcctccggccag
gccatgggtccgcggcccccgatgggagtccccggcccccgtgccatgccgccctacaag
tatgccaccggcgtccgtaaccccaaccctcagatggtgcaacctatggccttacagcag
gctcagccggccgtgcacgttcaaggccaggagcctctcacgtcctccatgctggccgct
gcaccccctcaggagcagaaacagatgcttggtgagcgtcttttcccgctgattcaatcc
atgcatgccaacctggcgggaaagatcaccggcatgttgctggagattgacaattcggag
ctgctgcacatgctggagtcccatgagtctctgcgctccaaggtggaagaggccgtcgcc
gtgctacaagcccaccaggcaaagaaagatgccactcaaaaagtgggcagcatagatacc
actgttgctgctgccacatcctga
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