Pungitius pungitius (ninespine stickleback): 119228192
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Entry
119228192 CDS
T07626
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119228192 (pnn)
03015 mRNA surveillance pathway
119228192 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119228192 (pnn)
03041 Spliceosome [BR:
ppug03041
]
119228192 (pnn)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119228192 (pnn)
Spliceosome [BR:
ppug03041
]
Complex C
Other components
EJC/TREX
119228192 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Toxin_trans
Motif
Other DBs
NCBI-GeneID:
119228192
NCBI-ProteinID:
XP_037343499
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Position
14:14268420..14274041
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AA seq
669 aa
AA seq
DB search
MAVVVRSLQDQLEKAKESLKNVDDHIRKLTGRDPNESRPGQNRRLGGPMAGPGGGRGRGL
NLLRRSLSDMGSGGPPAKQRDIEGALLRLAGDQRARRDSRQDSDADDDDDVKKPALQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESHVSTEKQKRRTEIEQK
LEVQAEAEKKKAESDKRELFEERRAKQTELRLLEQKVELAQLQEEWNSHNDHLVKFIRTK
TKPHIFFVPGKICSATQKLLDESTKNLNAVFEERREAFTEHLSKMESRPRRQPNRDQDGN
MAASGMDHSAEGKPTGQVVKGTGNKGDAEMEDEEDEDEDEDREKKGDRNFAAQEYKGEEV
FKKDDVEMVELIEEEEEDEKVAEEGIKDVEGKGEKEESLGSEEMEVGGGPEQVDRRKGEE
EGTVREQGPTDLQSEKSQDTQTSEPAAASQGAENPNHQPQPGRTAGEPPVKPSENTASAP
TPEPQTAPPQPGRDVIPDSEVQNSAPEKPEVEEKPGDEAPQKLPDSQEAPSIPPAPSKGK
DTGRGRQKEKEPKKKRGHSKSSSSSSSGSSSSSGSSSSSGSSSSSTSSSSSSSSSSRSRS
RDGSKRKRRPSEKARDRKKGEEKASRKRGGRDSKGPKEKEEKKRSEEGKPRSSRSDREHK
ERDRKDKRR
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtagtgcggagtctgcaagaccagctcgaaaaagcaaaagaaagcctgaag
aatgtggacgatcatattcgtaaattgacgggacgagaccctaatgaatcaaggccgggt
cagaaccgtcggctgggcggccccatggcaggcccgggtggaggtagaggcagaggattg
aacctgcttaggcgcagtctctcagacatgggaagcggcggcccccctgccaagcagagg
gacattgaaggagctctgctgaggttggcgggggaccagagggccaggagagactcgcgg
caggacagcgacgccgacgatgatgacgacgttaaaaagccggcgttgcagtcgtccgtg
gtagctacctccaaggagagaacacgcagggacctcatccaagatcaaaccatggatgag
aggggcaaacagaggaaccggcgtatgttcggcctgctgatggggaccctgcaaaagttc
aaacaagagtcccatgtgtccacagagaagcaaaagcgtcgtacggagatcgagcagaag
cttgaggttcaggctgaggctgagaaaaagaaggccgaaagtgataaaagagagctgttc
gaagagaggagagccaaacagactgagctgagactgctggaacagaaagtggaattagct
cagctgcaagaggagtggaacagccacaacgatcatctggtgaaattcattcgtaccaag
accaagcctcacatcttcttcgtacctggaaaaatttgttccgccacacaaaaactcctc
gacgagtccaccaagaacctaaatgccgtgtttgaggagaggcgtgaggcttttaccgaa
cacctcagcaagatggagtcccgcccccggaggcaaccaaaccgcgaccaggacggaaac
atggcagcatcagggatggaccactcggcggagggtaagcccacaggtcaggtagtcaag
gggacaggtaacaagggggatgcagagatggaggatgaggaagacgaggatgaagatgag
gacagggaaaagaaaggagacagaaactttgctgcgcaggaatacaaaggggaggaagtg
tttaagaaggatgatgtggagatggtggagttgattgaggaggaggaggaggacgagaag
gtagcagaggaggggattaaagacgtagagggcaagggggagaaggaggaaagcttaggg
tcagaggagatggaggtggggggcgggccagagcaggtggacaggaggaagggagaggag
gaaggaacagttagagagcaggggcccactgacctccaaagtgagaagagccaggacacc
cagacctctgaaccagctgcagccagccagggagcagaaaaccccaatcaccagccccag
cccggccgcacagcaggggagccgccagtaaagccctctgagaacacggcatccgctcca
accccagagccccagacggcccccccgcagccagggcgggatgtcatccctgactccgag
gtccaaaactcggcaccagagaagccggaggtggaagagaaaccaggtgacgaggctccc
caaaaacttcctgattcccaggaggctcccagtatcccccccgcgccctctaaggggaag
gacactgggagagggaggcagaaggaaaaggagcccaaaaaaaagcgtggtcatagcaaa
agctcctcctcttcctcctctggctcctcctcgagctcaggctcctcatcgtcctctggg
tcaagctcttccagcacatcctcgtcctcgtcctcatcatccagcagccgaagtcgcagc
cgagacggcagcaagcgcaaaaggaggccgtctgaaaaggccagggatcggaaaaaagga
gaagaaaaggctagccgcaagagaggaggcagggactcaaaggggcccaaagagaaggag
gagaagaagaggagcgaggaagggaagccccggtcgtcccgtagcgatagggagcataaa
gagagagacaggaaggacaagagacgctga
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