Pungitius pungitius (ninespine stickleback): 119228344
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Entry
119228344 CDS
T07626
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119228344 (col18a1a)
00535 Proteoglycans [BR:
ppug00535
]
119228344 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119228344 (col18a1a)
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119228344 (col18a1a)
Proteoglycans [BR:
ppug00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
119228344 (col18a1a)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119228344 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
119228344
NCBI-ProteinID:
XP_037343631
LinkDB
All DBs
Position
10:19924232..19977095
Genome browser
AA seq
1432 aa
AA seq
DB search
MRTRFGVWLLLTLWVVYSDAWFWEWTGAATFPPTADPEGSGTPAFSGEPPSESVAGLGAD
IIGEGPGIQKLVQARDETTEGPRLTALTPTTQPETQLDSEQGTAVISSHMQKPEDDGVSL
LQLIGDPPPGTLPESSSKYDLTGRPFITFEPKSNNVGQLARAHLPNPFYRNFALVFHLKP
TTDGAAVLFAVTDASQKVVHVGVKLSSVQGGKQDVVLYYTEPGAERSYEAARFPVPSMRD
TWTRFAIAVRDDKVMLYLGCDTDPMVTGLERSPDEMELEAGAGLFVGHAGGADPDKFVGV
MGELRVVGDPLAAERHCEEDEDDSDMASGEGSGFEEPRKPKAPGKKLGSTTPLPPTAPIP
QPPLTRKEGATSQSETGAKGEKGDRGDPGKKGDRGPIGPKGDASSGSGSRGGARGEKGEP
GENGLKGTAGFGYPGTKGDTGPPGPPGSPGPPGPATEVSVSSDGSVSSRGPGPRGPAGPQ
GAAGPQGPPGDDGEPGDPGEDGKTGAEGPPGFPGSPGNSGPKGDKGDRGDGQPGPRGPPG
PPGLPGTGSTFVDMEASGFPDLDSVRGLPGLPGPPGPPGPPGPATDSVGSASSSGAFGPP
GKDGHPGQPGSPGLPGSDGLPGVSGPKGDKGDSGDLGLPGAVGQKGSRGDPGLPGTSGET
GLAGLPGPIGPVGRPGPPGPPGPGYGVGFDDMEASGQGFRNLLPGERGPEGRQGPPGLPG
LQGTPGFPGLPGQKGSEGLTGSDGRPGLDGFPGPQGPKGDSGTKGERGDPGRDGTGVPGP
PGPPGPPGQFISRRPDNEDGLVGSEGRQGGPGLPGQAGFPGPAGPKGDRGDTGPPGHGDK
GQKGEPGLVVGPDGNLLHLEGLRGPKGDRGTPGPVGPPGQYGPTGIKGEMGMPGRPGRPG
VNGYKGEKGETGLGYGYPGVPGQPGPPGPPGPAIPLDRFNRYDDASRNYPATKGEKGESG
DRGAPGIPGTSSNFDIYTFKSELKGERGDLGVKGEKGEPGGGGYYDSRFGGAQGPPGPPG
KPGLQGPKGESVLGPAGPQGPPGPPGTGYDGRPGPPGPPGPPGPQGSSSLPGAYRPNHSL
SVPGPPGPPGPPGSPAPSSGVTILRSFDTMMATARRQSEGSLIYILDKADLYLRVRDGVR
QVMLGNYKPFSRDLDNEVAEVQPPPVILYPQSQDQSHNNGAGHYSQGGSAIRPIEPPPQP
PVEPRYPPQYDPKFPDPRLTGQTDTQRTEHRHPVTPQRPPGPPVQQPAGPLGPTAPGLHI
IALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRDGTPIV
NLKDQVLFSSWESLFADNVSKMRENVPIYSFDGRDVVRDSAWPEKMVWHGSSNKGHRQTD
HYCETWRAGDHAVTGLASSLQSGRLLQQTSSSCSGSYVVLCIENAFTSHSKK
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgaggacccggtttggagtttggcttttgttgaccctgtgggtggtctactctgatgct
tggttctgggagtggaccggtgctgcaacctttcccccaacagcggaccctgaggggtct
ggcactccagcattcagtggagaaccaccatcggagagtgttgctggccttggagcggac
atcattggtgagggaccagggatccaaaaacttgtgcaggctagggatgagaccacggag
ggacctcgactgaccgccctcacccctacgacgcaacccgagacccaacttgattcagaa
cagggaacagcggtgatttcatcacacatgcaaaaacctgaagacgatggcgtgtccctg
ctgcagctgatcggggatcctccccccggaaccctcccggaatcctcctccaagtacgat
ctgacgggaaggcctttcattacctttgaacccaaaagcaacaacgtgggtcagctggcc
cgtgcacacctgcccaacccattctaccgaaacttcgccctcgtcttccacctgaagccc
acgaccgacggggcggccgtcctcttcgccgtcacggacgcgtcgcagaaggtcgtgcac
gtgggcgtcaagctgtcgtccgtgcagggcgggaagcaggacgtggtcctgtactacacg
gagcccggcgccgagcgctcctacgaggcggccaggttccccgtgccctccatgagggac
acctggactcgctttgccatcgccgtgagggacgacaaggtgatgttgtacctcggctgt
gacaccgaccctatggtgacgggcttggagaggtccccggacgagatggagctggaggcc
ggggccgggctctttgtgggccacgccggaggagctgaccctgacaagtttgtgggggtg
atgggtgagctgagagtggtgggagacccgcttgccgctgagaggcactgtgaggaggat
gaagatgactccgatatggcttcaggtgaaggaagcggctttgaagaacccagaaaaccc
aaagcgcccgggaagaaacttggctccacgactcctcttccccccaccgcgcccattcct
cagcccccactgacgaggaaggagggggccaccagtcaatcagaaacaggtgctaaggga
gaaaagggcgaccggggggatccgggaaagaagggagacaggggtccaattgggccgaag
ggagatgccagctctggatccggctcacggggtggagcccgtggagagaagggggaacca
ggggaaaatggtttaaagggcactgcaggcttcggctacccgggaaccaagggagacacc
ggtccacctgggccgcccggttcccccggccccccggggcccgccaccgaggtctcggtc
agtagcgacggctcggtctcctccagaggccccggacctcgagggccggccggaccacaa
ggggccgcgggcccccagggacccccaggagatgatggagagccgggggatcctggtgag
gatgggaaaacgggcgctgaaggaccacccggcttcccaggatccccggggaactctggg
cccaaaggagataagggagaccgtggagatggtcagcctggccccaggggaccgccagga
cctccaggactgccaggaaccggatctacttttgtggacatggaagcctcagggttccct
gatctggactctgttcggggattacctggcctgcctggtccccctggtccccccgggccc
ccgggccctgctactgattctgtagggtcagcgtctagttctggggcattcggacctcca
ggaaaggacgggcatcccggtcaaccaggctcgcctggtttgccgggttctgatggactc
ccaggagtttctggaccaaagggagacaagggggattccggcgacctgggccttccagga
gcagttggacagaaggggtctcgaggagaccctggtttaccaggaacctcgggagagact
ggactggccggtcttcccggcccgattggaccggtcgggcgacctgggcctccagggcct
cctggacctggctacggtgttggatttgatgacatggaggcctcgggtcaaggcttcaga
aatctgctgcctggtgaacggggacctgaggggagacagggtcctccaggcttgcctgga
ctgcaaggcacacctggcttccctggtttaccgggtcagaagggttctgaaggcctcaca
ggaagcgatggacgtccggggttggatggcttccctggacctcagggaccaaagggggac
agcggcaccaaaggagaaaggggtgacccaggtcgagatggaacaggtgtcccggggcca
cccggaccacccgggccaccgggacagttcatctcccgaagacccgacaacgaggacggg
ctcgtcggcagtgaggggcgtcagggaggacctggtttacctggacaagctggattccct
ggtcctgctggaccaaagggggacagaggagacacgggccccccgggccacggggacaag
gggcagaaaggagaaccgggcctggtggtcggaccggatggaaacctcctgcatctggaa
ggcctgaggggtccgaagggagacagaggaacccctggacccgttggacctcctggccag
tatggacctactggtataaaaggggaaatgggaatgcctgggagacctggtcgtcctggt
gtaaatggttacaaaggggagaaaggagagacaggactcggctatggatacccgggtgta
cctggccaaccgggaccacctggaccccctggacccgccattccattggatcgctttaac
cgctatgatgacgcttcgaggaattacccggcgaccaaaggggagaaaggagagagtggg
gacagaggagctccaggaatcccagggaccagctctaattttgatatttacacattcaag
agcgaactgaagggggagcgtggagacctgggtgtgaagggagaaaagggagaacctggt
ggcggcggatattatgactcacgttttggaggagctcagggcccgccggggcctcctggc
aaaccgggcctgcagggtccaaagggagaatctgtattgggccctgcgggtcctcagggg
ccaccggggccaccagggactggttacgatgggcgcccaggtcctccagggccacctgga
cctcctggaccccaaggatcttcctcacttccaggagcatataggcccaatcactccctc
agtgttcctggacctcctggacctcctggtccgcctggtagccccgctccctcttctggg
gtcaccatcttaaggtcgtttgacacaatgatggcgaccgcgaggcgccagtcagaggga
agcctcatctacatcctggacaaagccgacctctacttgagagtgcgcgatggagtgcgg
caggtcatgctcggtaactacaaacccttctccagagatctggacaacgaggtggcggag
gtccagcccccgcccgtgatcctgtacccccagtcccaggaccagtcccacaacaacgga
gctggccattactcccagggaggttctgccatacgacccattgagcctcctccgcagcca
ccagtggagccccgataccccccccagtacgatcccaagttccccgacccgaggctcacg
ggccagacggacacgcagcggaccgagcacagacaccccgtgaccccgcagcgacccccg
ggcccaccggtgcagcagcctgccggcccactggggccaacggcaccaggactacacatc
atcgccctgaacgcccctcaaactgggaacatgcgagggatccgcggggcggacttcctg
tgcttccagcaggcccgcgccgtgggcctcaagggcaccttcagagctttcctctcctcc
aagctccaagacctctacaccatcgtccgcaggtcagacagggacggaacccccatcgtg
aacctcaaggaccaagtgctgttcagcagctgggagtctctctttgccgacaatgtgagc
aaaatgagggagaacgtaccgatctactccttcgacggcagagacgtggtcagagacagc
gcatggccagaaaagatggtctggcacggatcgagcaacaaaggccaccggcaaacggac
cactactgtgaaacatggcgggcgggcgaccacgccgtgacgggcctggcgtcctctctg
cagagcgggcgcctcctgcagcagacctccagcagctgctccggctcctacgtggtgctg
tgcatcgagaacgccttcacttcacactccaagaaataa
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