Pungitius pungitius (ninespine stickleback): 119228374
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Entry
119228374 CDS
T07626
Symbol
clasp1a
Name
(RefSeq) CLIP-associating protein 1a isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppug03036
]
119228374 (clasp1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ppug04812
]
119228374 (clasp1a)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
119228374 (clasp1a)
Cytoskeleton proteins [BR:
ppug04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
119228374 (clasp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
XMAP215_CLASP_TOG
HEAT_EF3_N
CEP104-like_TOG
HEAT
HEAT_EZ
TOR1L1_N
Cnd1
RTP1_C1
HEAT_DAAF5
Paxt-1_C
MMS19_N
ParcG
TAN
INTS1_R4
MMS19_C
TPR_20
Motif
Other DBs
NCBI-GeneID:
119228374
NCBI-ProteinID:
XP_062421149
LinkDB
All DBs
Position
10:complement(16438565..16488717)
Genome browser
AA seq
1611 aa
AA seq
DB search
MMEPSMESCLAQVLQKDMGRRLQVGQEIIDYFLDEEKSHDLEQDQTALDKMVDGIGSSWI
NSSNFKVALLGLDLLSALVTRLQERFRAHVGTVLPSLIDRLGDAKDQVRDQDQTVLLKIM
EQAASPQYVWDRMLGGFKHKNNRTREGVCLCLIATLSTYGAQGLTLSKIVPHICNLLGDP
TSQVRDGAMSCLVEIYRHVGERVRLDLCKKGLPQSRLNVIFSKFDEVQRSGNMMSSSASD
KNFEDEDSVDGGRSSSSTSSKAPPSGRRPVVTSARRPSSATTTKATAKEAAAGAVDEEDF
IKTFEDVPPVQIYSNRELEDQLGKIREVLSDDKHDWEHRVVALKKVRSLLLAGATEYEGF
PQQLRLLEAPLKLSAKDLRSQVVREACITLGHLSSILGNKFDHGAESIMPTLLNLVPNSA
KVMATSGVATIRLILRRTHYPRLIPIITSNCASKSVAVRRRCFEFLDLMLLEWQTNTLER
HVAVLTETIKKGIHDADSEARSIARKCYWGFHGHYSREAEYLFQALESTYQKALQSHLKG
SDSIVSLPQSDRSSSSSQESLNRPFSVKSVIGGSITRSKLVSSRASTTSGSLQRSRSDID
VNAASSAKSRVSAVPVSSPFGSAAALPPGSYASLDGTPGKSDGRVRTRRQSSGSVGGASP
SVVDSRGRSRAKVVSQSQRSRSANPINAGSRSSSPGKLLGHGSYGRIPRATLSASTTPAE
KRTRIPRSQGCSRETSPSRLGLASLCVKALPAALPYRTLARSRIPRPSMSQGCSRNTSRE
SSRDTSPARGFTPLASRRHSRSTSALSTADPHGQSDRYGLIHQARISASVNAMRVLNTGT
EVEAAVADALLLGDSRNKRKPLRRRYESPGMYSDDDANSDASSACSERSYGSRNGGIPHY
LRQTEDVAEVLNHCASSNWSERKEGLLGLQNLFKSQRILSRVELKRLCEIFTRMFADPHS
KVFSMFLETLVDFVTVHREDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDITRESFP
FDQQFNILMRFIVDQTQTPNLKVKVAILKYIESLARHMDPTDFVNSSETRLAVSRIITWT
TEPKSSDVRKAAQVVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSSNTSSGV
GSPGNTMGRTATRHAPSRTSPLTSPTNCSHGGLSPSRLWVWGVDGLSKHPPAPPPPPPHS
TPAAPSLRVLRRAYSPSMTEYDTENMNSEEIYSSLRGVTEAIQSFSYRSQEDLNEPSRQE
GRRDDAVGREGVASSMGSDARLGLDVVEGGRTALDNKTSLLNTPSARSFSGPRGREFAPY
GHGDTICSYGKSALKEAVFDDDVEQFRDGRRQESGENKMTIPKVFAPAIGHDRSDLVADL
LKELSNHNERSEERKGALVELLKITREDSLAVWDEHFKTILLLLLETLGDKDHTVRALAL
RLLKEILRNQPARFKNYAELTIMKTLEAHKDSHKEVVRAAEEAASTLAGSIHPEQCIKVL
CPIVQTADYPINLAAIKMQTKVIERIAKDSLLQLLPDIIPGLLQGYDNTESSVRKASVFC
LVAIYSVIGEDLKPHLALLTGSKMKLLNLYIKRAQTTNSNSSSSSDVSSHS
NT seq
4836 nt
NT seq
+upstream
nt +downstream
nt
atgatggagcccagcatggagagctgcctggcccaggtcctgcagaaggacatgggccgc
cggctgcaggtgggccaggagatcattgattacttcctggacgaggagaagtcccacgac
ttggagcaggatcagacagcactggacaagatggtcgacggcattggcagctcctggatc
aactccagcaacttcaaggtggctctgctcggcttggacctcctatctgccttagtgacg
aggctccaggagcggttcagggcccacgtgggaaccgttctgccaagcctcattgatcga
ttgggagacgctaaagaccaagtgagagaccaagaccaaacagtgctgctgaagatcatg
gaacaagctgccagcccgcagtatgtgtgggacaggatgctggggggcttcaagcacaag
aacaacaggaccagagaaggagtgtgcctttgtctcatcgccacgctgagcacgtatggg
gctcaaggcctgaccctcagtaagattgttccccacatatgtaacctcctgggggacccc
acaagtcaggtacgtgacggggctatgagctgcttggtggagatctacagacacgtgggc
gagagggtgaggctggatctctgcaaaaagggcctgccccaatcaaggttgaatgtaatc
ttcagcaaatttgatgaagttcagagatccgggaatatgatgtcatcctctgcttctgat
aagaactttgaggatgaggactctgtggatggaggccggtcctcctcctcgacatcctcc
aaagcgccccccagtggcaggaggccggtagtgacctctgctcgacgacccagctcagcc
accacaaccaaggccacagctaaagaggcagcagccggggctgttgatgaagaggatttt
attaaaacctttgaagacgtgcccccagtccagatctactccaacagagagctggaggac
cagctgggcaagatcagggaagtgctgtcagacgacaaacacgactgggagcaccgagtg
gtcgcgctgaagaaggtgcgttctctcctgctggccggggccactgagtacgagggtttt
cctcagcagctgcgtctcctggaggctcccctcaagctgtcggctaaagacctgcgctca
caggtggtccgagaggcctgcattactctgggacatctgtcatccatactgggaaacaag
tttgaccacggcgcggagagcatcatgcccaccctgttgaacctcgtgcccaacagtgcc
aaagttatggccacgtccggagtggccaccattcgcctcatcctcaggcgcacacactac
cctcgtctcatccccatcatcaccagcaactgcgcctccaaatcagtggcagtcaggcga
cgctgctttgagttcttagacctcatgctacttgagtggcaaactaatacactggaaaga
cacgtggctgttctgacggagaccatcaagaaaggcatacacgatgccgactctgaggcc
agatccatcgcaagaaagtgctattggggtttccatggtcactacagccgggaggcagag
tatctcttccaggcgctggagtccacctatcagaaggccctccagtctcacctgaagggc
tctgacagcattgtgtctctgccccagtcggaccgctcgtcctcgtcctcccaggagagt
ctgaaccgtccgttctctgtgaagagtgtcatcggaggaagcattacaaggagtaagctg
gtgagcagcagggcgtcgaccacgtcgggttctctccagcgctcccgcagtgacatcgat
gtgaacgccgcctccagcgccaagtcccgtgtgtccgccgtccctgtctcctcgcccttc
ggctctgcggctgccctccccccagggtcctacgcctcattagatggcactccgggtaaa
agtgatggtcgcgttcgtaccaggagacagagctcgggcagcgtgggcggagccagtcct
tcagtggtggacagcagggggcggagccgagccaaagtggtctcgcagtcgcagcgatcc
agatcagccaatcccatcaatgccggcagccgctccagctctccgggcaagctgctcggc
catggcagctacggccggatccctcgagccacgctgtcggcctccaccacgccagcggag
aagcgcaccaggatccctcgcagccagggctgtagccgcgagaccagccccagccgcctg
ggcctcgccagcctgtgtgttaaagctcttcctgctgctcttccctaccgcacgctagcc
cggagccgcattccccgccccagcatgagtcagggttgcagtcgcaacaccagtcgcgag
agcagccgcgacaccagccccgctcggggcttcactcctctggcgtcccgacgtcactcc
cgttcaaccagtgctctctccacagccgacccccacggccagtcagatcgatacggttta
atccaccaagcaaggatctcggcttcagtcaacgccatgagggtcctgaacacgggcaca
gaggtggaagcagcagttgctgatgctctgctattaggagactccaggaataagcgaaag
ccactgaggcggaggtacgagtcgcccggcatgtactctgacgacgatgccaacagcgac
gcctccagcgcctgctcagagcgctcgtacggctcgaggaacggaggcatcccccattac
ctgcggcagacggaggacgtggccgaggtcctcaaccactgtgccagctccaactggtcc
gagaggaaggagggcctgctgggcctgcagaacctcttcaagagccaaagaatattgagc
cgagtggagctgaagagactttgtgagatcttcaccaggatgtttgcagatccacacagc
aaggtgttcagcatgttcctggagactctggtggactttgtcacagtacacagggaggac
cttcaggactggctcttcgtcctgctcactcagctgctgaagaagatgggggctgatctg
ctgggctccgtccaggccaaagtccagaaggctctggatatcacgagggagtccttccca
tttgaccaacagttcaacattctgatgaggttcatcgtggatcagactcagacccccaac
ctgaaggtgaaggtggccatcctgaagtacattgagtccctggctcggcacatggacccg
acggactttgtgaactccagcgagacgcgcttggctgtatctcgcatcatcacctggacc
actgaacccaaaagctctgacgtcaggaaggcggcccaggtggtgctcatctctttgttt
gagctcaacaccccggagttcaccatgctgctgggagctctgcccaaaaccttccaggat
ggggccaccaagctgctgcacaaccacctgaagaactccagcaacaccagcagcggcgtg
gggtctcctggcaacaccatgggccggacggcaacacgccacgcccccagcagaaccagc
ccgctcacctctccgacaaactgttcccatggaggactgtctccaagtcggttatgggtt
tggggtgttgacggactctcaaagcatccccctgcccctcctcctcctccgccccactcc
acccctgctgccccctccctaagggtcctacgcagagcatattcacccagcatgacagag
tacgacacagagaacatgaactctgaggagatctacagctctctgcgcggcgtcaccgag
gccatccagagcttcagctaccgcagccaggaggacctgaacgagccgagccgccaggag
ggcaggagggacgacgccgtaggcagagagggcgtggcctcctccatgggctccgacgcc
cgcctcggcctcgacgttgtggaagggggccgcaccgccttggacaacaagacctccctg
cttaacacgccgtcggcccgctccttctcggggccgcggggaagggagttcgctccctat
ggccacggagacaccatctgctcgtacggcaagagcgccctgaaggaggcggtgtttgat
gacgacgtggagcagttcagagacgggcgacgtcaggaaagtggtgaaaacaagatgacg
atccccaaggtctttgctcccgcaatcggtcacgaccgctcggacctggtggccgacctg
ctcaaggaactgtccaatcacaacgagcgatccgaggagcggaaaggcgccctggtggag
ctgctgaagatcacacgggaggacagcctagctgtgtgggacgaacacttcaaaaccatc
ctcctgctcctgctggagacgctcggggacaaagaccacaccgtccgagcgctggccctg
cgtctgctgaaggaaatcctgaggaaccagccagcccgcttcaaaaactatgctgagtta
accatcatgaagaccctggaggctcacaaagactctcacaaagaggtggtgcgtgcggcc
gaggaggcggcctccaccctggccggctccatccacccggagcagtgcatcaaggtgctg
tgtcccattgtgcagacagccgactaccccatcaacctggccgccatcaagatgcaaacc
aaagtaattgaacgcatcgccaaggactcgttactgcagctgctgcccgacatcatcccc
ggactcctgcagggctatgacaacacagagagcagcgttcgcaaggccagcgtgttctgt
ctggtggcgatctactctgtgattggcgaggatctcaaaccccacctagcactgctcacg
ggcagcaagatgaagctactgaacctgtacatcaagcgagcgcagacgaccaacagcaac
agcagcagttcctcggacgtctcctctcacagctga
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integrated database retrieval system
