Pungitius pungitius (ninespine stickleback): 119228384
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Entry
119228384 CDS
T07626
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119228384 (upf3a)
03015 mRNA surveillance pathway
119228384 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119228384 (upf3a)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119228384 (upf3a)
mRNA cycle factors
P-body specific factors
119228384 (upf3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
DUF6980
Motif
Other DBs
NCBI-GeneID:
119228384
NCBI-ProteinID:
XP_037343755
LinkDB
All DBs
Position
10:18049339..18055677
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AA seq
467 aa
AA seq
DB search
MRSEKDQMTAGKQKGVVEIQFSDVSREQENITGNLKQKEEKKEVFTKVVIRRLPPSLSKE
QLEELLSPLPSYDYFEFFPADQSLYPHLFCRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKTGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKMSDKDIKIKLLKKSDRDDDVDSDRMKDKSDVGETDRCKWEKAGGQTKSK
DPKEKGQPDSDKEQREQHGRRQRDKEHRGKDEERKRQRHHYEFEKFMRRKDETKWGKGYC
QDRAKKEGHHHGYSYCPDSGDKLGKEDREELANRKERLRNKVSEKDRPAMQLYQPGARNR
KRMSSAGKSFDCIPVGHSPEPGTEHCYEAVAMATGLEKGFEPSKDEQ
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgcgggtaagcagaaaggcgtcgtggagatacag
ttcagcgacgtctcgagggagcaggagaacattaccggtaacctgaagcagaaagaggag
aagaaggaggttttcactaaggtggtgattcgaaggcttccacccagcctgtcaaaggag
cagctagaagagctgctcagcccacttccgtcttatgactattttgagttcttcccagca
gatcaaagtctttatccccacctgttctgcagagcgtacatcaatttcaagaaccctgaa
gacatccttctgttcagggaccgatttgatggctacgtcttcatcgacaacaagggccag
gagtatccggccgtggtggagtttgcccccttccagaaaatctccaagaagaagctgaaa
aagaaagatgcaaaaaccgggagtattgaagaagaccctgagtacaagcggttcttggag
aattactcctgtgatgaggagaagtctatggccaaccccgagactctgctgggagagata
gaggccaagacccgagagctcatagctaaaagaacgacgccgcttctggagtacatcaaa
aataagaaaattgagaaacagagaatacgagaggagaagagggaggagaggaggaggagg
gagctggaaaagaagcgacaacgggaggaggaaaagaggaagcggcgcgaggaggagaga
cgcaagcggaaggaggcggagaagcagaagaaaatgtccgacaaagacatcaaaattaag
ctcctgaagaagagtgacagggatgatgacgtggactcagaccgaatgaaggataaaagt
gacgtaggggagacggacagatgcaaatgggagaaagctgggggacaaacaaagtcaaag
gaccccaaggaaaaagggcagcccgacagcgacaaggagcagcgggagcagcacggccgc
aggcagagagataaggagcaccgggggaaggacgaggagaggaaacgccagcggcaccac
tacgagttcgaaaagttcatgcgccgaaaagacgagaccaaatgggggaagggctactgc
caggaccgggccaagaaagaggggcaccaccatggctattcctactgccccgatagtgga
gacaaactgggaaaggaggacagggaggagctggcgaacaggaaggaacgcctccgaaac
aaggtgagcgagaaggaccgtccagccatgcagctctaccagccgggagcgcgcaacagg
aagcgcatgagctcagccggcaaaagctttgactgcatcccggtgggccactcccctgaa
cccgggacggagcattgctatgaggcggttgctatggccacggggctggagaagggtttt
gagccaagcaaagatgaacagtga
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