Pungitius pungitius (ninespine stickleback): 119228415
Help
Entry
119228415 CDS
T07626
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119228415 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119228415 (prpf40a)
Spliceosome [BR:
ppug03041
]
Complex A
U1 snRNP components
U1 related factors
119228415 (prpf40a)
Complex B
119228415 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
119228415
NCBI-ProteinID:
XP_037343826
LinkDB
All DBs
Position
10:8069307..8080435
Genome browser
AA seq
875 aa
AA seq
DB search
MSSSDANNGPSQAPPYPGVLPSAIPPQFMGPPGMPPHFPPIGMPPMGQRPSMTPLPPGII
PPGIMPPMGQVSLMPGMMPPMMPAMMLPPHIPAAAVQPTGPPGVDSSVAAPGTVSATNGS
PQDDQPKKKSLWTEHKSLDGKTYFYNTETKQSTWEKPEDLKSPAEQMLSKCPWKEYKSDT
GKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTEAAAPGTAAAPAMQADNTAAMVTVM
EAEIVAAVSEEHLSQAAVHHAAELQTVDAPVASTESSVATEAAVSIEVTKEERPELQKKT
YKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNAYKVQ
TEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFNELEVWSCVPERDRLEI
YEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDE
ELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHDHGQL
HSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKG
FLVEINTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKE
AAFKNMLKLATPPLEPETTWEGIRERFLKESAFEDVTLESERKRIFKDFMHVLEHECQHH
HSKTKKHSKKSKKHHRKRSRSRSGSESEDDEYHKKKKRSQSKSPSERSSSGESERSYKKS
KKHKKKGKKRRHKSASPESDNEKKGRERDGKREKDLDKDKENDKSRGKSRPDSKQKSPKR
KAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggacgctaataatggcccgagccaagcgccaccttatccaggtgttctg
ccctcagcgatacctccccaatttatgggaccaccaggaatgccgcctcatttccctccc
attggaatgcccccaatgggacagaggcccagcatgactccactgcctcctggtataatt
cccccaggcataatgccgccaatgggacaggtgagcctgatgccaggcatgatgccacct
atgatgccagcgatgatgttgcctcctcacattccagctgcggctgtacagccaacgggg
ccacctggtgttgactcctcagttgctgcacctggaacagttagtgccacaaatggatct
ccacaggacgaccaaccaaagaagaagtccctgtggacagaacacaaatcattggatggg
aagacctatttctacaacacagagaccaagcagtccacatgggagaaaccagaggatctc
aaatctcctgcagagcaaatgctgtccaagtgcccttggaaggagtacaagtcagacacg
gggaagccttattattacaactctcagactaaggagtctagatggacgaaacccaaagag
ctggaggatctggaagctatgatcaaagcagaggagaatgggacggaggcagcggctcct
ggaacagcggcagctcccgcgatgcaagcggacaacacggccgctatggtaaccgtaatg
gaggcagagattgtagccgccgtctcggaggagcacctgtctcaggcggccgtgcatcac
gcagctgagctccagactgtggatgcacctgttgcttccaccgagagttcagtcgccaca
gaggccgcagtcagtattgaagtcacaaaagaagaaaggccagaacttcagaagaagacg
tacaaatggaatacaaaagaggaggccaagcaggccttcaaagagctgctgaaggagaag
ggcgtgtcctcaaactcttcctgggaacaggctatgaaaatgattattaatgatcctcgc
tacagtgcccttcccaaactgagtgagaagaaacaggcgttcaatgcttacaaagtccaa
accgagaaggaggaaaaagaggaggccagaattaaatacaaggagtccaaagaaaccttt
cagcggttcctcgagaaccacgagaagatgacatctaccaccagatacaagaaagcagaa
cagatgtttaatgagcttgaggtgtggagctgcgtaccagagagagaccggctggagatc
tatgaggatgttttgttctacctcgctaagaaagagaaggagcaagcaaagcagctgaga
aagagaaactgggaagctctgaagaacattttggacaacatggccaacgtcacgtaccgc
accacctggtccgaggctcagcagtacctgctggacaaccccaccttcgcagaggacgag
gagctgcaaaacatggacaaagaggatgccctcatttgctttgaggagcacatccgagct
ctggagaaggaggaggaggaggagaaacagaagactcttctcagggagaggagacgacag
cgcaagaaccgagaggccttccagaaattcctggacgagctccacgaccacggtcagctt
cactccatgtccgcgtggatggagatgtacccgaccctgagctcagacatccgcttcgcc
aacatgctgggccagccgggctccactccccttgatctcttcaaattctatgtggaggat
ttgaaggcccgctatcatgatgaaaagaggatcatcaaagatattcttaaggacaaaggc
tttctagtggaaatcaacacgagctttgatgactttggatcagtcatcagctcagacaag
agagccaccacactggatgcgggaaacataaagcttgcatttaacagcctgctggagaag
gcggaagccagagagagagagcgagagaaggaggaggcgaggaaaatgaaacggaaagaa
gccgcctttaagaacatgctgaagctggcgacgcccccgctggagcccgagaccacatgg
gaggggatcagagagagattcttaaaagaatctgcctttgaagatgtgactctggagtcg
gagaggaaaaggatattcaaagacttcatgcacgtcttggagcatgaatgccaacatcac
cactccaagacaaagaagcactccaagaagtccaagaagcaccacaggaaacgctcccgc
tcccgatcgggctcggagtctgaggacgacgagtatcacaagaagaaaaagaggtcacaa
tctaaatctccctctgagcgctcgtccagcggagaatccgagagaagctataaaaaatcc
aagaagcacaagaagaagggcaagaagaggcgtcacaagtctgcatcgccagaatctgac
aatgagaagaaaggaagagagcgcgatggaaagcgtgaaaaggacctggacaaagacaaa
gagaacgacaagtctcgggggaaatctcgcccagactctaaacagaagtctcctaaaaga
aaagctgcaaaagaggagggtggctgggatacatcaggcagtgagctgagtgaaggagag
ctggagaaaaggagaaggactttactggaacagctggatgcaccttga
DBGET
integrated database retrieval system
