Pungitius pungitius (ninespine stickleback): 119228444
Help
Entry
119228444 CDS
T07626
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119228444 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119228444 (sf3b1)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119228444 (sf3b1)
Spliceosome [BR:
ppug03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119228444 (sf3b1)
Complex B
119228444 (sf3b1)
Complex C
U2 SnRNP specific factors
119228444 (sf3b1)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
119228444 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
119228444
NCBI-ProteinID:
XP_037343884
LinkDB
All DBs
Position
10:2198171..2209416
Genome browser
AA seq
1319 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLEEGDQGVGLDSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEEDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRLQLVEKAKAG
DLKVVNGSAASAAAAKRKRRWDQTADQTPTNTTPKKMSSWDQADSSAETPGHTPGHTPAH
TPSNSRWDETPGRAKGSETPGATPSTRMWDPTPSHTPAGAATPGRGDTPGHATPGHGGAT
GSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQ
MGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELD
AMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLP
FLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKARE
FGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDE
DYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLL
PFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTIS
ALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYY
TREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMAL
DRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADID
HKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSA
KVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG
MHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLEL
LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP
FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHR
QTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCR
MLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNMYVRYELDYAL
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaggcccagatcctggagatccagggg
atgaaggcgaccctgctcgaggaaggagatcagggagtaggcctcgattccaccggcttt
tttgaccaggagatctatggaggtagcgacagccgctttgctggatatgtcacttccatc
gctgccaatgaacaggaagaagatgatgaagaggattcatcaacaagcttgttgggacaa
aagaagccagggtaccatgcaccagtggcgatacttaatgccatcccgcagtcagatgag
caatacgacccatttgcagagcatcggccagcgaagattgcagagcgggaagatgaatac
aaagccagacgcagacagatgatcatctcacccgagcgactcgacccctttgcagatgga
ggcaaaacgccggatcccaagctgcaggtcaggtcgtacgtggacgtcatgttggagcaa
aacctgtccaaagaggagagggagatccgtctgcagttggtagaaaaggccaaagccggg
gacctgaaagtcgtcaacgggtctgctgcctccgcagcggccgcaaaacgcaagcgtcgc
tgggatcaaaccgccgaccaaacccccactaataccacacccaaaaagatgtccagctgg
gaccaggctgactcctctgctgagactccaggacacacccccggacacacccccgcacac
acaccctcaaacagccgctgggatgaaacccccgggcgcgcaaagggcagtgagacccca
ggggccactcccagcacccgcatgtgggaccccactcccagccacacacccgccggcgcc
gccacccccggcaggggggatacgcctggccacgccacccccggccacggtggagccacg
ggaagcgtacgcaagaaccgctgggacgaaaccccgaagaccgagagggagaccccggga
cacgggagcggctgggccgagacgccacgcacggacagaggggacgagtcagtgggcgag
accccaaccccgggggccagtaagaggaagtcccggtgggatgagacccctgccagtcag
atgggctcctctacaccactgctgaccccaggaaagactcccatcggaacgccagctatg
aacatggctacgccaacgccaggtcacctgatgagcatgactccagagcagctgcaggcg
tggaggtgggagagggagattgatgagaggaaccggcctctgacagacgatgagctcgat
gccatgttcccagagggatacaaggttttgcctccacccgccggctacgtgccgatccgc
actccggcccgtaagttgtcagccacaccgacccccattggaggcatgacgggcttccac
atgcaggtggaggaccgcaccaccaaacagatgaatgaccagccctcaggaaacctgccc
ttcctcaaacctgatgacatccagtactttgacaaactgctggtggaggtggatgaatcc
acgctgagccccgaggagcagaaggaaagaaagattatgaagctgctgcttaagattaaa
aatggaacaccgcccatgagaaaggccgctctgcgtcagatcacagataaagcccgtgaa
tttggggcaggtccgctgttcaatcagatcctgccgttgctcatgtcccccactttggag
gaccaggagcgccacctgctggttaaagtcattgaccgcattctctacaaactggatgac
ttggttcgaccatacgtacacaagatcctggtggtgattgagccgctgctgattgatgag
gactactacgccagagtagaaggcagagaaatcatctctaacttggcaaaggctgccggc
ttggccaccatgatctccacgatgcgacccgatatcgacaacatggacgagtacgtcaga
aacaccacagcccgagccttcgccgtggtggcctccgctctgggcattccctccctcctg
cctttcctcaaagctgtgtgtaaaagcaagaagtcctggcaggcccgccacacgggcatc
aagatcgtgcagcagatcgccatcctcatgggctgcgccattctgccccatcttcgcagc
ttggtggagatcatcgaacacggtctggtagacgagcagcagaaggtgaggaccatcagc
gccctcgctatagctgccctcgctgaagccgctacgccctacggtatcgaatccttcgac
tcggtcctcaagccgctctggaagggcatcagacaacacagaggaaagggtctggctgct
ttcctcaaagccatcggctacctgatcccactgatggacgccgagtatgcgaactactac
accagagaggtgatgctgatcctcatcagggagttccagtcccctgacgaggagatgaag
aagattgtactcaaggtggtgaagcaatgttgtggtaccgatggtgtggaagccaactac
atcaagacagagatcctgcctcccttcttcaagcacttctggcagcacaggatggctctg
gacagacgcaactacagacagttggtggacaccacagtggagttggccaacaaagtggga
gctgcagagatcatctctcgcatcgtcgacgacctgaaggacgaggcggagcagtacaga
aagatggtgatggagaccattgagaaaatcatgggcaacctgggcgctgccgacatcgac
cacaagctggaggagcagctgatcgacggcatcctgtacgccttccaggaacagaccaca
gaggactctgtcatgctcaacggtttcggcacggtggtcaacgccctcgggaagcgcgtg
aagccctacctgcctcagatctgcggtacggtcctctggcgtctcaacaacaagtcggcc
aaagtccgtcagcaggccgccgacctgatctcccgcaccgccgtggtgatgaagacctgc
caggaggagaagctcatgggtcacttgggggtggtgctgtacgagtacctgggagaggag
taccccgaggtgctgggtagcatcctgggagcgctgaaggccatcgtcaacgtcatcgga
atgcacaagatgactccaccaatcaaagacctgcttcctcgtttgacccccatcctgaag
aacaggcacgagaaggtgcaggagaactgcatcgacctggtgggccgcatcgctgacagg
ggggctgaatatgtgtcggccagggaatggatgaggatctgttttgagctgctggagctg
ctgaaggctcacaaaaaagccatccgcagagctaccgtcaacacgtttggttacatcgcc
aaagccatcggcccccacgacgtcctggccactctgctcaacaacctgaaggtccaggag
cgtcagaacagagtctgcaccaccgtggccatcgccatcgtcgccgagacctgttccccg
ttcacggtgctgccggcgctcatgaacgagtaccgcgtgccggagctcaacgtgcagaac
ggcgtgctcaagtccctctcctttctgttcgagtacatcggcgagatgggcaaagactac
atctacgccgtcacgccgctgctggaggacgccctcatggaccgagacctggtccacaga
cagaccgccagcgccgtggtccagcacatgtctctgggcgtctacggcttcggctgcgag
gactccctcaaccacttgctcaactacgtgtggcccaacgtgttcgagacgtcgcctcac
gtgatccaggccgtcatgggcgccctggagggcctgagggtcgccatcgggccctgccgc
atgctgcagtactgcttacagggtttgttccatccggccaggaaggtgcgagacgtctac
tggaagatttacaactccatctacatcggctcgcaggacgcgctcatcgctcactaccca
caggtctacaacgacgagaagaacatgtacgtccgctacgagctggactacgccttgtaa
DBGET
integrated database retrieval system
