Pungitius pungitius (ninespine stickleback): 119228639
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Entry
119228639 CDS
T07626
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119228639 (pms1)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
119228639 (pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box_2
HMG_box
HATPase_c
Motif
Other DBs
NCBI-GeneID:
119228639
NCBI-ProteinID:
XP_037344345
LinkDB
All DBs
Position
Unknown
AA seq
893 aa
AA seq
DB search
MKQLPADTVRLLSSSQVITSVVNVVKELMENSLDAGASSIDVKLENSGLDRIEVRDNGHG
IKGEDAPVMAATHFTSKICSTEDLEMLETYGFRGEALGSICSVAEVTVVTKTEEDDISTQ
YTLNFSGEIVSQKPSHFGQGTTVSVLKLFKNIPVRRQYYYSTKKCKEELKKIQDLLMAYA
IIKPELRLTLIHNKVVVWQKAAVADHRSALLAALGAGTVSNLLACHHQQEQPELLLGGFF
PKPGADFSSTSSPNADKTFLFVNNRPVHQKDIMKLLRQHYAAQYPDEPTRNRYPTAMLHV
TVPPSSLDVNVTPDKTQVLLHNEEAVLTAVEALLVSLYGYRADTDPPAEKQPGSKTPPPR
PGAVPTDASPPDQRLEGLAGLAGRHGNVPNDGDEAPSSGTSADASLQTSNGSSSSSVAED
WVVNPIPAGLESNAFLYTDEAAQSAHAAGGGGEGQLSAADWSRGTALIDPATREPLRPIK
IHQAPRGGPPDSEVEGQSASNRKTVNAITEKRAALTAYDLISHRAMRAPLSPAALFEKEA
RAEVLRERPSAGLLEVSGAVHDRWKNLREEDRKKFEEKAKKHLEHHDQRTQLASAAGLGE
AGVSGPRGPAQGQKRKAPLSNQQLLDQLFAAQPQKKARNPAPKPSQLLPCSVAALRLQLQ
RLSSRSSAVPPGPRLVNRLASHSAWLLLCGQRLMLLNPFRVEEALLFKRLLENNIVPAVS
LQKPIQLTDGVLGGAEYAEALCSMERERPEPHGGVVFCDPRLLANGFQIRLTPGLTSAQR
HLEVTAMADCVPFLGVEDLREILTAVLHRKARSLPECRPLKVTNYLQGEAVRLARQLPTN
LSREDVEGTLLRMQQQLAGSNQTCIHGRPFLQHLSDIPSTHQEAEALLRPLEL
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagcttcctgcggacactgtccgcctgctgtccagctcccaggtcatcacctct
gtagtcaacgtcgtgaaagagctgatggaaaactccctggatgccggggcctccagcatc
gacgttaaactggagaactccggtttggaccggatagaagtgcgggataacggccatgga
atcaaaggtgaagacgctcctgtgatggctgcgacacactttacttcaaagatctgcagc
accgaggacctggagatgctggagacgtatggcttcagaggagaggcgctgggctcgatc
tgctccgtggccgaggtgactgttgtcacgaagacagaggaggacgacatcagcacccag
tacacgcttaacttctcaggggagattgtctctcagaagccgtctcacttcggtcaaggc
acaacagtgagtgtactgaagcttttcaagaacattccggtgagacgtcagtactactac
tctacaaagaagtgcaaggaggaactgaagaaaatacaggacctgctgatggcctacgcc
attataaagccagagttgaggctcacgctcattcacaataaggtggtggtttggcagaag
gccgcggtggccgatcacagaagtgccctccttgctgccctgggggccggcaccgtgtcc
aacctgctcgcttgccaccatcagcaagagcagccggagttgcttttaggtggatttttt
ccaaagcctggagccgatttctcctcgaccagctcacccaacgctgacaaaacatttcta
tttgtcaacaaccggcccgtccaccaaaaagatataatgaagctgctacgtcaacactac
gctgctcagtatccagatgagccgacccggaaccgctaccccaccgccatgctacacgtc
accgttccaccgtcctcactcgatgtcaacgtgacgccggacaagacccaggttcttctt
cacaacgaggaggccgtgctcactgcagtggaagcgttactggtttctctctatggctac
cgggccgacaccgaccccccagcggagaagcagcccggcagcaagacaccccccccgcgg
cccggcgccgtgccgaccgatgcttcgccaccagaccaaaggctagagggcctcgccggc
ctcgccggtcgccacggtaacgtccccaacgacggtgacgaagccccgtcgtcgggaaca
agcgccgacgcttcactgcagacctccaacggcagctcgtcttcttctgtggcggaggac
tgggtcgtcaaccccatcccagcggggctcgagtccaacgccttcctctacaccgacgag
gccgctcagagcgcccacgcggcgggggggggcggcgagggccagctatcggccgcggac
tggagccgggggacggctttgatcgacccggcgacccgggagcccctgcggcccatcaaa
atccatcaggcgccgaggggcggcccccccgactccgaggtggagggtcagagcgcctca
aacagaaagacggtcaacgccatcacagagaagcgggccgctctgacggcctacgacctg
atcagccaccgcgccatgagggcgccgctgtcccccgccgccctgttcgagaaggaggcc
cgagcggaggtcctcagggagagaccctcggccggcctgctggaggtcagcggcgccgtt
cacgacaggtggaaaaatctgagggaggaagaccgcaagaagtttgaggagaaggccaaa
aaacacctggaacaccacgaccaaaggacccagttggcctctgccgcgggcctcggggag
gcgggtgtgagcggcccgaggggccccgcgcagggccagaaacgcaaggccccgctgtcc
aaccagcagctgctggaccagctcttcgccgcgcagccccagaagaaggccaggaaccct
gcacccaaaccctcgcagctcctcccctgcagcgtagctgcccttcggctgcagctccag
cgcctttcatcccggagcagcgcggtgccgccgggcccccgccttgtaaaccggctggcc
tctcacagcgcctggctgcttttatgtggtcagaggctcatgttgttaaacccatttcga
gtggaggaggccttactgtttaagagactcctggagaataatatagttccagcagtgagt
ctccagaagcccatacagctaacagatggagttctcggcggggctgaatatgcagaggct
ctgtgcagcatggagagagaaaggcctgagccacacggaggggtcgtgttctgtgacccc
cggctgctggctaatggctttcagatccgactcactccaggcctcacgtcggcccagaga
catctggaagtgacagcgatggcagactgcgtgcctttcctcggcgtggaggacctcagg
gagatcctgacagcagttcttcacaggaaggcccggtccctgccagagtgccgtcccctc
aaagtcacaaactacctgcaaggtgaagcagtacgacttgctcgtcagttgcctaccaat
ctgtccagggaggatgtggagggaacccttctccggatgcagcagcagctcgctgggagc
aaccagacgtgcatccacggccggccgttcctgcagcacctgtcagacattccttccaca
caccaggaagccgaagctctgctgaggcctctggagctgtag
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