Pungitius pungitius (ninespine stickleback): 119228673
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Entry
119228673 CDS
T07626
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119228673 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119228673 (xrcc5)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
119228673 (xrcc5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
DUF2997
Motif
Other DBs
NCBI-GeneID:
119228673
NCBI-ProteinID:
XP_037344409
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Position
10:complement(8344567..8351047)
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AA seq
771 aa
AA seq
DB search
MICKINGEQLLLGTGTTFLFLLFTVSLRSHNKVTRGLCNREERKMAKAALVLCMDVGFSM
SNSAPGEESPFELAKKVIQKFVQRQVFAETKDELAVVLFGTGSTKNSLDQDGQYQNITVH
RPLMVPDFQLLEEIENQIHPENQQVDWLDALVVCMDLLKTGTQGKKCDRVNISLLTDLNT
PANSEQLDVIIENLKKANITLQFFLPFPVEDDEEDGGDADRRSPGPRGTGKGLSREQQSG
LDMVKHVMLTLNEEDGLDEIYSFRKAIEQLCMFKCIEKRPTAWPCLLTIGSCLPIRIVGY
KAVTEERLKKTWTTVDAQSHQKDDVKRETVYCLDDDNETEVQKDDTIQGFRYGSDIVPFS
KVDQEQMKYKHDGKCFAVLGFTKQNLVRRHHFMGNQVLKVFPAKEDEHAGIALSALIRAL
DGLNMAAIVRYAYNSISSPQVGAAFPCIKKDYECLIYVQLPFTEDLRQFAFPSLENNKKF
TPSENQLSAVDSLIDSMMLVEEDDDNGGQKDMFKVHHIPNPAFQRHFQCLHHRAVSPGAP
LPPMEPWLKAALERPGVITERCRCPLEEVKKKFPLTEVEKKKKLKTSAQIFGIDSGEPAA
KKAKRDEEEEEEDYNFADISEGSVTSVGSVNPARDFRLLIKKKSLPFGDVCQQLTRRIEQ
LLGNKNTPYYMKSITCIQAFREQSVKLEEANLYNGYLQSLKRSIPNRGLEVFWDLLVQDA
ITLISKDEVEGSTVSKTDADQFLVSEEEKKEEAAALPAEDTGDVDDLLDMM
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgatctgtaaaattaacggggaacaattattactcggaaccggaactacattcctgttt
ctactgttcacagtttctcttcggagccataataaggtaacacgcggactttgtaacagg
gaagagagaaagatggccaaagcagcgttggtgttgtgcatggatgttgggttctccatg
tccaactcggccccgggtgaagagtctccttttgaacttgccaaaaaagtcatccagaag
tttgtccagcgccaggtttttgcagaaaccaaagatgaactggctgtagtcctgtttggc
acaggctccaccaagaactccctggaccaggacggccagtaccagaacatcaccgtgcat
cgtcctctcatggtgcccgattttcagcttcttgaggaaatcgagaatcagatccatcca
gagaatcagcaggtcgattggctggatgcgcttgttgtgtgcatggatctccttaagaca
ggaacacaggggaagaagtgtgatcgtgtcaacatttccctcctgactgacctcaacact
ccggccaactcggagcagctagacgttatcattgaaaacctgaaaaaagctaacatcacc
ctgcagtttttcttgcctttccccgtggaggatgatgaagaggatggaggagatgcggac
agaagaagccctggtccccgaggaacaggcaaaggtctgtcgagggaacagcagagcggc
ctcgacatggtgaaacacgtcatgctgaccctcaacgaggaggacggcctggatgaaatc
tactccttcaggaaggcgattgagcagctgtgcatgtttaagtgcatcgagaagaggccc
acggcctggccctgtctgctgaccatcggcagctgtctgcccatccgcattgttggatac
aaagcagtgaccgaggagagactcaagaaaacgtggacgacagttgatgctcaatcacac
cagaaagacgacgtgaagagagagaccgtctactgtctggatgatgacaacgagacagag
gtgcaaaaggacgataccatccaaggtttccgttacggaagtgatatcgttcccttctcc
aaagtagatcaagaacagatgaaatacaagcacgacgggaagtgctttgctgtccttggc
ttcaccaaacagaacttggtacgccgccatcacttcatggggaatcaagtcttgaaggtg
tttcctgccaaggaagacgagcatgccggaattgcgctgtccgctctcatccgggcgtta
gacggactcaacatggcggccatcgtacgctacgcctataacagcatcagcagccctcaa
gtaggagcagccttcccctgcatcaagaaggactatgagtgtctgatctacgtccagctg
cccttcacggaagacctgaggcagtttgcatttccttctctcgaaaacaacaaaaagttc
actccgtccgagaaccagctgtctgccgtggactctctcattgactccatgatgctggta
gaggaggacgacgataacggaggccaaaaggacatgtttaaggtccaccacattcccaac
cctgccttccagaggcacttccagtgtctgcaccaccgggccgtgagccccggcgcccct
cttccccccatggagccctggctgaaggctgcgctggaacgcccgggtgtcattactgaa
cgttgccgttgtccactcgaggaggtgaagaagaagtttcctctcacggaagtggagaag
aaaaagaagctgaaaaccagtgcacagatttttggcatagactctggggagccagctgcc
aaaaaggcaaaaagagacgaagaggaggaggaggaggactacaactttgcggacatttcc
gaagggtctgttacttcggtgggaagcgtgaatccagccagggacttcaggttgttgatc
aagaagaagagtctaccattcggagacgtctgtcagcaactgactcggaggatagagcag
ttgcttggcaacaagaacacaccgtactacatgaaaagcatcacctgtatccaggccttt
agagagcagtctgttaagctggaggaggccaatctgtacaacggctacctccagtcccta
aagagaagcatcccaaacagagggctggaggtcttctgggacctgctggttcaagacgct
ataactctgatcagtaaggacgaggttgaaggaagcactgtatccaaaaccgatgctgat
cagtttctggtttctgaggaggagaagaaggaggaggcggccgctctgccagctgaagat
accggagatgttgatgacttgctggacatgatgtaa
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