Pungitius pungitius (ninespine stickleback): 119228920
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Entry
119228920 CDS
T07626
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119228920 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119228920 (bard1)
04121 Ubiquitin system [BR:
ppug04121
]
119228920 (bard1)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119228920 (bard1)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119228920 (bard1)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
119228920 (bard1)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
119228920 (bard1)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
119228920 (bard1)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
119228920 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_5
Ank_3
Ank_4
BRCT
BRCT_2
Ank_KRIT1
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
119228920
NCBI-ProteinID:
XP_037344808
LinkDB
All DBs
Position
10:8828389..8843266
Genome browser
AA seq
783 aa
AA seq
DB search
MDDDVLVRKHDWKNTKEAVRNFRRLLLCSKCSNVMTEPVCLGVCEHLLCRSCAAPRAGDG
CVVCQSPAWVKDIQINRQLSSVIQLFCGLEFLLNPAEQADSSLAQNQTPPQSPVLKQKKN
FKIWFSPRSRKVRCVVEKQDPVPESPPPRETTAAQQDTSTAQCQDLSVFNFTSSSQDSGS
SGSPRSRNGKGPTKRNAVQGKGSARGATRTTRKKTKQKQKQKQHRLEAINQQWGISGEAD
AIKEKEQKPCAKEPSRSSKRVSFLSPAVTPDEPQPKVPHGVPNELAPGSSLLEGAITVLG
AQTQPGQRTSDSVGRHDTRPETTIPERQVDVSPSKPSSKRSRVEERVATLETTPKRPRAS
PGRRRRSPASPAAHNALSSDGRRCGDSPSHPAAAGEQSPCTPVASGGRPTSGSPAFMKRN
HKGETPLHLAAIKGDVEAVNALLDQGADPNLKDNAGWTPLHEACNLGHLVVVEVLVSRGA
LLNTPGYENDSPLHDAVRNGHPAIVKLLLRLGASRHVLNQHGKRPADYAGSPEMLEIFLE
APEESQNANTSPSPSTGLSMRSNCVGRDELVVLLTSRLSQPERARVAKLGELLGGRTADT
FSGLVSHVVVPVGHLPTTSSTLLGLLAGCWVLKFSWVEACLQAGEWTPEAEHEAGEGAQR
SRINRRSLLPPLFDGCFFFLLGPFKAISKEELAKLLREGGGQLLSRQPKPDSDVTQTLSA
AAYHALPGTDQALCTQYIIYDPQGPHKPAVVRRGKVWSAPCTWLLNCIAAFRLLPVTDSQ
TPV
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgacgtcctggtacggaaacacgactggaagaacacgaaggaagccgttagg
aactttcgacggctgctactttgctccaaatgctcaaatgtgatgacggagcctgtgtgt
ctcggggtgtgcgagcatttgctgtgcaggtcctgtgcggccccccgggcaggagacggc
tgtgtggtgtgtcagagtcccgcttgggtgaaggacatccagatcaacaggcagctcagc
agcgtcatacagctcttctgcggtttggagttcctgctcaatcccgcggaacaagcagat
tcctctctagcccaaaaccaaacaccaccgcagagccctgtccttaaacaaaaaaagaac
ttcaagatctggttcagccctcgcagccgcaaggtacgctgcgttgtggagaaacaagac
ccggtaccggagagcccgcctcctcgagagacaactgcggcacagcaggacacctccact
gctcaatgtcaggacctgtcggttttcaatttcacctcgtcctcccaagactctggctca
tccggttctccgaggtcaagaaatggaaagggcccaacaaagagaaacgctgtccagggg
aaagggtcggcgcgaggggccacgcggaccactcgaaaaaagaccaagcagaagcagaag
cagaagcagcacaggctggaggccataaaccaacagtgggggatcagtggggaggcagac
gccataaaagaaaaggagcaaaagccctgtgcaaaagagcctagcaggtccagtaaacga
gtttctttcctcagccctgccgtcacgcccgacgagcctcagcccaaagtaccacacggg
gttccgaatgaactcgcccccgggagcagtctcctagaaggtgccatcactgtactgggc
gcccaaacccagcccggtcagagaacgtcggacagcgtgggccggcatgacacccggcct
gaaactacgatccccgagagacaggtggacgtgtctccctcgaagccgtcctcgaaaaga
tccagggtggaggagagggttgccacgttggagaccacaccgaaaaggccccgggcttcc
ccgggaaggaggagaagatctccagcgtctccagctgcccataacgctctttcttcagat
ggccgcaggtgtggtgacagcccctctcatccggccgctgccggcgaacaatctccatgt
actccagtggcatctggtggaagacccacctcggggagccctgcgtttatgaagaggaac
cacaagggagagaccccgctgcatctggctgctataaagggcgacgtagaggctgtcaat
gcgctgctggaccagggggctgaccccaacctgaaggataatgccgggtggacacctctg
catgaagcatgtaacctgggtcacctggtggtagtggaggttctggtctcaaggggagcc
ctgctgaacacacccggctacgagaacgactctccgctccacgacgccgtgaggaacgga
cacccggccatcgtcaaactgctgctgcggctcggcgcctctcgacacgtccttaatcag
cacggaaagcggcctgccgattacgcagggagtccggagatgctggagattttcctggaa
gccccagaagaatcccaaaatgccaacacatctccaagcccctccaccggtctctccatg
aggagcaactgtgtggggagggatgaactggtggtgcttctgaccagcaggctgtcccag
ccggaaagggctcgagtggccaaactgggagagcttctgggggggaggacggcggacacc
ttttctggcctagtgagccatgtggtggtgccagtaggacacctccccaccaccagctcc
accctgcttggtcttctcgccggctgctgggttctcaaattcagctgggtggaagcatgt
ctgcaggcaggcgagtggacgcccgaagcagagcacgaggcgggagaaggcgcgcagcgg
agtcgcatcaacagacgtagcttgctcccgccgctcttcgatggctgcttcttcttcctc
ctcggccccttcaaggcgatttccaaagaggagctcgccaagctgctgcgggaaggagga
gggcagctcctgagccggcagcccaagcccgacagcgatgtgacgcagaccctgagcgcg
gctgcctaccacgcgctgccgggcaccgaccaggccctgtgcacccagtacatcatctat
gacccgcagggcccccacaagcccgcagtggtgaggagagggaaggtgtggtcagctccc
tgcacctggctcctcaactgcatcgcggccttccgtctcctccccgtgacggacagtcag
actccggtctaa
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