Pungitius pungitius (ninespine stickleback): 119228962
Help
Entry
119228962 CDS
T07626
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119228962 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119228962 (dhx36)
03012 Translation factors [BR:
ppug03012
]
119228962 (dhx36)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119228962 (dhx36)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119228962 (dhx36)
Translation factors [BR:
ppug03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119228962 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
AAA_22
ATPase
AAA_19
NB-ARC
NPHP3_N
HerA_C
AAA_16
Motif
Other DBs
NCBI-GeneID:
119228962
NCBI-ProteinID:
XP_037344927
LinkDB
All DBs
Position
3:complement(10594085..10611165)
Genome browser
AA seq
1066 aa
AA seq
DB search
MSSGYGGRGGRRGRGGGGGRGYRDGSRERSDRRGGGGSSGYNNDFDKDRGGGERLDRPPP
HLKGREIGLWYAKFGAVRRKQGDRRSRAVVQMDEAREQHITKLLSSVQSDRPGPWRDYND
IKASTSNSRQTAASSSGHCYFDGEMSEEEKRKLEFKSEEEEDVFAGQKKATHKSQRHFSR
AAVKDEPPDAWDEEEQQEKEEKEMLRRNDKDLEFLFQEVARDNSLDERLKRDLESKKSDT
KYKEMLKFREKLPSYGKKEELVELINSNRVLVVSGETGCGKTTQVTQFILDDYINRGVGS
VCRVVCTQPRRISAISVAERVAAERAESVGNGNSCGYQIRLQSRLPRKQGSVLYCTTGII
LQWLRTDPLLSTISHLVLDEIHERNLQSDVLLVIVKNILTLRDDLKIILMSATLNAEKFS
KYFGNCAMIHIPGLTFPVEEFLLEDIVEMTRYSPQNQDRRPKRGFWQGRNSRPEKEEKEA
EYKESWPTYARTLQGRYSDHTIETLEMLDDDDKIDLELILALIRHIVLKEEDGAILVFLP
GWDNISGLNDLLVAQQMFRSDRFVIIPLHSLMPTVNQTQVFKRPPPGVRKIVIATNIAET
SITIDDVVYVIDGGKIKETNFDTNNNISTMTAEWVSLANAKQRKGRAGRVCPGKCYHLYN
GLRASLLDAYQLPEIMRTPLEELCLQIKILKLGSIAQFLEKSLDPPTTKAINLAIKNLVG
LNALDRSENLTALGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFFIPLG
KEKMADMRRRTLSRNSKSDHLTIVNAFQGWEEAKRSGARYEKEYCWDNFLSANTLQMLHN
MKGQFAEHLMHTGFVSSRDPKDPKSNVNSDNEKLIKAVIVAGLYPKVATIRPTRSKKAGV
KAYTQADGKVVIHPKSVNAEETEFNYTWLVYHLKMRTSSIFLYDCTEVSPFSLLFFGGDI
TIQKDEDQETIAVDQWIVFRSPARIAHLVKSLKKELDSLLEEKIRNPAPVDWQNRQSKDC
AVITAIIDLLTTQEKPSGGAKGYGKTWSSAPRGQHTRFNDEDDEDD
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgagttctggatatggtggtcgaggaggtagaagaggcagaggaggaggaggaggtcga
ggatacagagatggaagcagagaaagatcggaccgaagaggcggaggaggctcgagtgga
tacaataacgactttgacaaggatcgaggtggaggtgaacgactggaccgccctcctcca
cacctgaagggacgtgagattggtctgtggtacgcgaaattcggtgccgtgaggaggaag
cagggggaccggagatcgcgggcggtggtccagatggatgaggccagagaacagcatatt
accaagctgcttagctctgtccaaagcgatcgccctggtccgtggagagattacaatgat
ataaaagcctctacttctaacagccggcaaacagctgcaagtagcagtggtcattgttac
tttgatggggaaatgtctgaagaggaaaaacggaagcttgagttcaaatctgaggaagag
gaggacgtttttgcaggccagaagaaagcaactcacaaatcacaacgtcacttctcccgg
gcagctgttaaagatgagcctccagacgcgtgggatgaagaagagcagcaggaaaaggag
gagaaagagatgctgagaaggaacgacaaggacctagagttcttattccaggaagtagcc
agagacaactcactcgatgaacgcttaaagagagatcttgagagcaagaaatcagataca
aagtacaaagaaatgctgaaattcagggagaaactaccatcttatggcaaaaaagaggag
ctggttgagcttatcaactcgaaccgtgtgctggtggtgagcggggaaacaggatgtgga
aagaccactcaggttacccagttcatcctagatgactacatcaatagaggcgttggctcc
gtgtgtcgtgtggtctgcacgcagcctcgtcgcatcagtgccatctcggtggcagagcgc
gttgcggcagaaagagcagaaagtgtaggaaatggaaattcttgtggttatcaaatccga
ctgcagagccggttaccacggaaacaaggttcagtcctgtactgtacaacaggcattatt
cttcagtggcttcgcacagacccgttattgtccaccatcagccacctggtgttggacgag
atccacgagaggaacctgcaatctgacgttttgctcgtcattgtgaagaacatactcacc
ctacgagatgacctcaagatcatactcatgagtgccacgctcaacgctgagaagttttcc
aaatatttcggcaactgcgcaatgatccacatccctggtctgacgttcccggtcgaggag
ttcctgctcgaggacatcgtggagatgaccaggtattctcctcagaatcaggaccgccgc
ccgaagagaggcttttggcaggggcgcaactccaggcctgagaaggaggagaaagaggcg
gagtacaaggagagctggcccacctatgcacgcacgctgcagggcagatactctgaccac
actattgagacactggagatgttggacgatgatgacaagatcgacctggagctgatcctg
gctctgattcgccatattgtgctcaaagaggaggacggagccatcttggtcttccttcct
ggctgggacaacatcagcggtctcaatgacctactcgtggctcagcagatgttccgatca
gaccggttcgtgatcatccctttgcactccctcatgccgacggttaaccagacgcaggtg
ttcaaaagacctcctccgggagttagaaagattgtgattgctaccaacatagctgagacc
agcatcaccatcgacgacgtggtttacgtgattgatggaggcaagattaaggagaccaac
tttgacaccaacaacaacatcagcaccatgacggcggagtgggttagcctggccaacgcc
aaacagagaaagggacgtgctggcagagtgtgtccagggaagtgctatcatctgtacaac
ggtctcagggccagcctgctggacgcttatcaattacccgaaatcatgaggacaccactg
gaggagctctgcctgcagatcaagattttgaagctcggctccatagcgcaattcctggag
aaatccctggacccccccactacaaaagccatcaacctagccatcaagaaccttgtaggc
ctgaacgccctggaccgctcagagaatctgacggcgctgggtttccacctggctcgcctg
cctgtggagcctcacattggcaaactcattctgtttggagccctgctgggctgcctggac
cccgtcctgaccatcgctgcttcactcagcttcaaagaccctttcttcatacctctgggt
aaagagaagatggcagacatgaggagaaggaccctgtccagaaactccaagagtgaccac
ctcaccattgtcaatgccttccagggctgggaagaagccaaacgcagtggagccaggtat
gagaaagagtactgctgggacaacttcctgtctgccaacacactccagatgctgcacaac
atgaagggtcagtttgctgagcatctaatgcatacgggctttgtcagcagcagagatcca
aaagaccccaaatccaatgttaattcagacaatgagaagttgatcaaggcggtgattgta
gctggtctgtacccgaaggtggcaacgatcagacctactcgcagcaagaaggctggggtt
aaggcgtacacccaagcggatggaaaggtggtcatccacccgaaatcggtcaacgccgaa
gagaccgagttcaactatacgtggctggtctaccacctcaagatgagaacgagcagtatc
ttcctctacgattgcaccgaggtgtccccgttctcgctgctgttcttcggcggagacatc
acgatccagaaggacgaggaccaggagaccatcgccgtggaccagtggatcgtcttcagg
tccccggctcgcattgctcacctcgtcaaaagtttaaagaaggagctggattctctgctc
gaggagaagatccgcaaccctgctcccgtggactggcaaaaccgtcagtccaaagactgc
gccgtcatcacagccatcatagacctcctcaccacccaggagaagccctcaggcggcgcc
aagggctacggcaagacgtggtcgtcagccccgagaggacagcacacacgcttcaatgac
gaggacgacgaggacgattag
DBGET
integrated database retrieval system
