Pungitius pungitius (ninespine stickleback): 119229227
Help
Entry
119229227 CDS
T07626
Name
(RefSeq) paired amphipathic helix protein Sin3a-like
KO
K11644
paired amphipathic helix protein Sin3a
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
119229227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppug03036
]
119229227
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
119229227
REST complex
119229227
Heterochromatin formation proteins
Other heterochromatin formation proteins
119229227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
119229227
NCBI-ProteinID:
XP_037345342
LinkDB
All DBs
Position
4:23381541..23395873
Genome browser
AA seq
1315 aa
AA seq
DB search
MKRRVEDQEPIFAPQQQQARRPPVQGIADSFQHRALAPASSVTEAPADNMQPSPGIQYSL
PQGYQVPTMPQSTSGHGHNTAAPHVGPNAHALAVQSQGPAAVQGHVHPPAPMTSAQGQQF
QRLKVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVINRVSQLFKGHPDL
IMGFNTFLPPGYKIEVQTNDLVNVTTPGQIHYITPHGISVQNIPMSGASSQPASHNQHQS
LPQAGPHAAATTTTTTTTTTTNTAATPTPPAPTPPTATLPAPNKTSKPIQSPAHTPTSQP
NPSIPSYASPRSPSVQSHTPVSSTPSGGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIY
KAFLEILHTYQKEQRNAKEAAGNYTPSLTEQEVYTQVAKLFKNQEDLLSEFGQFLPDANS
TMLLGKTTPDRVESVRNDHGGTVKRPLLSSKQRLSQNGLPIRRPPGVGVPPVKKKPKILG
KDHSMIEVGKHSTSTETMFFEKVKKALRSSEAYDNFLRCLHIFNQEVISRAELVQLVIPF
LGKFPELFTWFKNFLGYRESSHGESSHVESLPKERATEGIAMEIDYASCKRLGSSYRALP
KSYQQPKCTGRTPLCREVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVV
LEANLATIRALETVQRRISRMSAEEQLRFKLDNTMGGSSEVIHRKAIQRIYGDKAHDIID
GLKKNPAVSVPIVLKRLKMKEEEWREAQRGFNKIWREQNEKYYLKSLDHQGINFKQNDTK
VLRSKTLLNEIEMLYDDRQERASEEAAAPPLSGPHLTQTYDDSQILEDAAALIIHHVKRQ
VGIQKEDKYKIKQIIHHFIPDLLFARRGELSDVEDEEEEEDEEEEEEDMELDPDGPKKHN
GLPGASPSKSKLLFGNAAAQRARGAEDAYSVFFVNNYWYIFLRLHHILCSRLLRIYGQAE
KQIEEDAREREWEREVLGLKREKNDNPAIQLKMKEPLDVDVEDYYSVFLEMVRNLLDGNM
EPTHYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHLVTDDVCSRVTDMYLSESANKATG
GPQSTQTSRAAAEGAYQRKAEQLMTDENCFKLLFAKNRGAVSLSMELLDTEEENSDEPAD
AERWSDYVGRYLNSDSASPELRDHLSQKPVFLPRNLRRIRKCQRGWERLQQQRMKTAPSE
KPPDGELELERPCMFKLNSYKMVYVCKSEDYMYRHTALTRAHQSQQRVNTRLHRRFHTWL
GGWAEEHVSADTAADNRKWLMGERREGLLPCTTTRCPEVLHYIPVNRYRVTYRTL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcgcgtggaggaccaggaaccaatatttgcgcctcagcaacagcaagcacgt
cgccccccagttcaaggcattgcagacagcttccagcaccgggccctcgccccggcctct
tccgtgacagaggcccctgcagacaacatgcagccctcccccggcatccagtactccctt
ccccaaggctaccaggtgcccacaatgccccagagcacgagtggacacggacacaacacc
gctgctcctcatgtcggccccaacgctcacgccctggcggtgcagtcccagggccctgcg
gcggtccagggtcacgttcatccaccggcacccatgacctcggcccaaggacagcagttt
cagcgactgaaggtcgaagacgccttgtcctatctggatcaggtgaagctgcagtttggg
aaccagccacaagtttacaatgacttccttgatattatgaaagagttcaagtcacagagc
atcgacacccctggagtcatcaaccgcgtctcccagctgtttaagggccatccggacctc
atcatgggcttcaacactttcttgccacccggatacaagatcgaggttcagaccaacgat
ctggtcaacgtgaccacgccgggtcagatccactacatcacccctcacgggatctctgtt
cagaacatccccatgagcggagcgtccagccaacccgccagccacaaccagcaccagagt
ctgccacaggccggcccgcacgccgccgccaccaccaccaccaccaccaccaccaccacc
accaacacagccgccacccccaccccgccggcccccaccccgccaaccgccaccctgccg
gctcctaacaaaaccagcaagccgattcagtctccggcgcacacgcccaccagccagccc
aacccatccatcccctcctacgcctcaccgcgctccccctccgtccaatcgcacacaccc
gtgagcagcacgccgtccggtgggccgcccctccagaacaaccagcccgtggagttcaac
cacgccatcaattacgtcaacaagatcaagaaccgcttccagggtcagccggacatctac
aaagccttcctggaaatcctgcacacataccagaaggaacaacgaaatgctaaagaggcg
gctggcaactacaccccgtcgctgacggagcaggaagtctacactcaggtggcgaagctc
ttcaagaaccaggaggacctgttgtcagagttcggacagttcctccctgatgcaaacagc
acaatgctgctgggaaagactacaccagaccgggtggagtctgtgcgtaatgatcacggc
ggcacggtgaagagacctttactgagcagcaaacagcgactgagccagaacggcctgcca
atcaggagaccacctggggtgggagtcccgcctgtcaagaaaaagcccaaaatattaggg
aaggatcacagcatgatcgaggtgggcaaacacagcaccagcactgaaacaatgttcttc
gagaaggtgaagaaggctctgcggagctccgaggcgtacgacaacttcctgcggtgtctt
cacattttcaaccaggaagtgatctctcgcgccgagctggtccagttagtcatcccgttc
ctcggcaaattcccggagcttttcacgtggttcaagaacttcctgggctaccgagagtcg
agccacggcgagtcgagccacgtggagagtttacccaaggagcgagcgaccgagggcatc
gccatggagatcgactacgcctcctgcaagaggctgggctccagctacagggcgctgccc
aagagctaccagcagcccaagtgcaccggaaggacgccgctgtgcagggaggtgctgaat
gacacgtgggtgtcgtttccatcgtggtccgaagattcaaccttcgtgagctccaagaag
actcagtacgaggagcacatttacagatgtgaggacgagcgcttcgagctggacgtggtg
ctggaggccaacctggccacgatacgagccctggagacggtgcagcggaggatctcccgc
atgtcggcggaggagcagctgcgcttcaagctggacaacaccatgggcggctcctccgag
gtgatccaccgcaaggccatccagaggatatacggggacaaggcgcacgacatcatcgac
ggactcaagaagaacccggccgtgtcggtccccatcgtgctgaaaagattaaagatgaag
gaggaggagtggagagaagcccagagaggcttcaacaagatctggagggagcagaatgaa
aagtattacctgaagtctctcgaccaccaaggcatcaacttcaagcagaatgacaccaag
gtgttgcgttcaaagaccttgctcaatgaaatcgagatgctgtatgacgaccgccaggag
cgagcgtcggaggaagcggccgcgccgccactcagcggcccccacctgacccagacctac
gacgacagccagatcctggaggacgccgccgccctcatcatccaccacgtcaagagacag
gtgggcatccagaaagaggacaagtacaagatcaagcagatcatccaccacttcatcccc
gaccttctgttcgcgcggcgcggcgagctctccgacgtggaggatgaggaggaggaggag
gacgaagaggaggaggaagaagacatggagttggaccccgacggccccaagaagcacaac
ggcctgccgggcgccagcccgtcaaagtccaagctcctcttcggcaacgcggcggcccag
agggcgcggggcgccgaggacgcctacagcgtcttctttgtcaacaactactggtacatc
ttcctccgtctgcaccacatcctctgctcccgtctgctgcggatctacggccaggccgag
aagcagatcgaggaggacgcccgcgagagggagtgggagagagaagttctggggctcaaa
cgggagaagaacgacaacccagcaatccaactgaagatgaaggagccattggatgtggac
gtggaggactattactcagtgtttctggagatggtgcgtaatctgctggacgggaacatg
gagccgactcattacgaggactccctgagggaaatgttcaccatccacgcctacatcgcc
ttcaccatggacaagctcatccagagcatcgtccggcagctccagcacctcgtcaccgac
gacgtgtgttcgcgcgtcaccgacatgtacctgagcgaaagtgccaacaaggccacgggg
gggcctcagtccacgcagacgtcccgggccgcggcggagggggcctaccagcgcaaagcc
gagcagctgatgacggacgagaactgcttcaagttgctgtttgcgaagaaccgaggagcc
gtcagtctgtcgatggagctgctggacacggaggaggagaactcggacgagccggcggat
gcagagaggtggtcggactacgtgggcagatacctcaactccgactctgcgtccccggag
ctgcgcgaccacctgtcccagaagcccgtgttcctccccaggaacttgaggcggatcagg
aagtgccagaggggctgggagcggctgcagcagcagcggatgaagacggcgccctcggag
aagcctccggacggcgagctggagctggagaggccgtgcatgttcaagctcaactcctac
aagatggtctacgtgtgcaagtcggaggactacatgtaccgccacacggcgctcacacgc
gcccatcagtcccagcagcgggtcaacacgcgcctgcaccggcgcttccacacgtggctc
ggcggctgggccgaggagcacgtgagcgccgacacggccgccgacaaccgcaagtggctg
atgggagagcggcgagagggcctgctgccctgcaccaccacccgctgccccgaggtgctc
cactacatccccgtcaacaggtaccgggtgacgtacagaacgctgtag
DBGET
integrated database retrieval system
