Pungitius pungitius (ninespine stickleback): 119229233
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Entry
119229233 CDS
T07626
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04382
Cornified envelope formation
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119229233 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119229233 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119229233 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119229233 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119229233 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119229233 (col4a2)
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119229233 (col4a2)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119229233 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119229233
NCBI-ProteinID:
XP_037345346
LinkDB
All DBs
Position
10:complement(11191164..11245447)
Genome browser
AA seq
1670 aa
AA seq
DB search
MSGTMQGQRSRGLEDLRLLLLCLCVAILASGAQAGGKKHSGPCGGRDCSGGCKCFPEKGS
RGHPGPLGPQGPSGPLGRPGDVGIEGPKGQKGDRGRSGIIGPKGDAGMAGVPGFSGNNGI
PGHPGQAGPRGKPGADGCNGTQGDSGLPGQPGYPGPPGFTGQSGWKGQKGDSLDVSVFMR
RFRGDPGTPGFNGILGLQGNPGWVGNRGIPGPKGPPGPPGPRGPKGNMTKVLKGFKGGQG
DIGPPGPPGNSTHQQVKPPSAPRGEKGVKGESGDPGDNKGETGVTGLPGPRGLSGKDGRP
GLRGDTGDEGPRGADGAKGDRGDPGELISDPGSTIAGPPGPLGEQGPQGERGTVGDQGVP
GRPGIPASDTQQQVWDFMGPFGTKGESGEKGQPGEPGRSAETAGPPGDKGRPGPSGPQGP
KGTWAEYFKGAPGGRGRPGNAGLKGGKGDHGLCECKVAHSLPGPLGPAGDAGDAGMTGEF
GREGDSGDPGPEGNKGLPGSPGADGPTGPKGRKGDSIVASQKGYHGDPGDHGRDGEPGAL
GAPGPDGLPGIPGSRGFPGEGPKGEVGDKGFPGRPGLPGVSGLIGTDGRVLGGVKGQRGL
PGEDGLAGYDGFPGTPGAPGGCSETGDEGQVDITGPCDAVPGPPGLHGPPGPNGLPGFRG
PPGQKGPQGPLGANGEKGETGDQGIGGYPGPPGFSGPRGDLGVPGSKGSVGTPGVPGARG
RYGLQGEKGVHGEIFGASTGPPGDPGLRGIQGNKGQIGDPGAFGFPGIPGMPGMIGFKGE
HGPLGLQGEEGRPGPAGQYGYPGDPGQAGPLGTLGSPGQPGFTGERGTEGDLGPPGPIGL
KGIPGNYGNDGVVGESGPPGDGGPPGADGRPGLPGIKGVKGSPGMSGFDGIRGDIGPKGF
SGFAGEPGIPGQVGLKGMKGLSGEKGNRGLNGPPGANPKIPPKMIASMKGVKGDFGQYGN
KGFTGPRGIKGLPGVPGYEGTHGHPGSPSNKKGYRGELGAEGLPGMKGMPGPTGNRGIPG
FEGMQGNRGIKGSPGAYGASGDTGRKGGKGDKGSRIDLHGTTGLRGEYGLPGEPGQKGLT
GQTGDSGSPGFDGIEGRKGEAGDPGAGGYPGGDGQRGTPGNQGQKGFPGTPGKDGNPGLP
GFPGNKGFPGLKGLYGLDGLKGQKGIRGTPGLDSIGPAGDPGGKGERGEGGDPNSQPGAP
GSVGLKGFQGSQGDQGQPGQPGLRGPEGPSGTPDRPGRSGDPGSTGPKGYLGFPGASGFP
GVDAPPGEKGVVGLNGYPGVPGRKGFKGDQGSFGYRGPNGVSGKKGVKGDQGVMGLPGII
GVKGERGPAGPKGNTGPQGFKGFPGNQGPTPFPLRLPGERGHGGPQGIQGPKGHSGEPGP
QGPPGGAGFIGPSGQKGMPGISGHPGTPGFRGEFGKVGHPGLLGMEGRRGNPGIPGLPGM
PGRSVSVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSCLPRF
NSMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEAEIKPYISRCSVCEAPSVAIA
IHSQDITIPQCPAGWRSMWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECNGA
KGSCHYFANEHSFWLTSIDRSFHTEPASETLKAGQLLSRISRCQVCMKNL
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcaccatgcaaggacagaggagcagaggactggaggacctgaggctgctgctc
ctgtgcctctgcgtggccatcctcgcctccggagcgcaagcgggtgggaagaagcacagc
ggcccctgtggaggaagagactgcagcggaggatgtaaatgtttcccagagaagggtagc
aggggtcaccctggccctctcggcccccagggccccagcgggcctttggggagaccaggg
gatgttggtattgaaggcccaaaggggcagaaaggtgaccgcggccgtagcggcatcata
ggtcccaaaggcgatgcgggaatggccggtgttcctggattttctggaaacaatggcatc
cctggccaccccggacaagccggacccaggggcaagccaggtgcagacggctgcaacggg
acgcagggcgattcagggttaccagggcaacccggctatcctggcccacctggttttact
ggacagtcgggctggaagggacagaagggggactctctggacgtcagtgtgttcatgagg
cgcttcaggggagatccaggcacaccaggattcaacggaatattggggcttcagggaaat
ccgggatgggtgggtaacagaggtataccaggaccaaagggtcccccagggcctcccggt
ccccgtggaccaaagggcaacatgaccaaagtgctaaagggattcaaaggaggacaagga
gatatcggaccaccagggccaccaggaaactctactcatcagcaggtcaaaccaccctcg
gcgcctcgtggagagaaaggtgtgaaaggagaatcaggagacccgggtgacaacaaagga
gaaacgggtgtgacgggattacctggaccgcggggcttgtctggcaaagatgggcgtcct
gggcttcggggggacaccggagatgaaggaccacgcggtgcagatggtgctaagggagac
agaggtgacccaggagaactgatatcagaccccgggtctacaatagctggtcctcccggt
cctcttggtgagcagggtccgcagggagagaggggtacggttggagaccaaggcgtcccc
ggacgtccgggtattcccgcctctgacacccagcaacaagtttgggattttatggggcca
tttggtacgaaaggggagtcaggagagaagggccaaccaggggaaccaggacgctctgct
gagactgccggacccccgggggacaaggggcgcccggggcccagtggccctcaaggtccg
aaaggaacatgggccgagtacttcaaaggggctcccggtgggagaggaagacccggcaac
gcaggcttaaaaggagggaaaggcgatcacgggctgtgtgaatgcaaagtggcacactct
ctacctgggccacttggccctgctggtgatgctggtgatgccgggatgactggagagttt
ggtcgggagggggattcaggcgacccgggtcccgaaggaaacaagggattacctggatct
cctggtgccgacggcccaacgggtccaaagggtcgaaagggggattcgatcgtggcctca
caaaaaggatatcatggagatccaggggatcacgggcgagacggtgagcccggcgctttg
ggtgctccaggcccagatggtttgcctggcatccctgggagccgaggttttccaggagaa
ggtcccaaaggagaagtgggagacaaaggtttcccaggccggcctggtctacctggtgta
tccggactaattgggacagatggtagagtccttggtggggtcaaaggccaacgtggttta
cctggtgaagatggccttgcgggttatgatggatttccagggacacctggcgcgccaggc
ggctgtagtgaaacaggagatgaaggacaggtggatataacaggtccatgcgatgctgtt
cctggacctcctgggctgcatggacctccaggacctaacggactaccaggattccgaggt
cctccggggcaaaaaggaccacagggtccattaggagcaaacggagaaaaaggcgaaaca
ggagatcaaggcattggtggctatcctggaccaccaggtttttctggcccccgtggagac
ttgggagttccagggagcaaaggttcagtgggaacccctggtgtgcctggtgcaagaggc
cggtacgggttgcaaggtgagaagggtgttcacggagagatctttggagcatcgacagga
ccccccggtgacccaggattgcgtgggattcaaggcaataaaggccagatcggagatcca
ggagcattcggctttccaggaatacctggcatgcctggcatgatcggcttcaagggtgag
catggccctttgggcctgcagggagaggaggggagacctgggccagcaggccagtacggc
taccccggtgatcctggacaagcaggtcctctaggcacgctcgggagtcctggacagcca
ggattcactggagagaggggaactgaaggtgacctgggtccacctggtccaataggatta
aaaggcatcccagggaattatggtaatgatggtgttgttggagagtctggcccaccaggg
gacgggggaccaccgggtgcagatggacgtccaggacttccaggaataaagggagtcaaa
gggtcccctggcatgtcaggttttgatgggatcaggggtgatatagggccaaaaggcttc
agtggttttgccggagaacctggaattccgggacaagttggcttaaaaggaatgaagggt
ttaagtggagagaaaggtaatcgtggtttgaacgggccacctggagctaaccctaaaatt
ccccccaagatgattgctagcatgaagggagtcaagggtgacttcggacaatatgggaat
aaaggttttaccgggccgagaggtattaagggtttgcccggtgtgccgggctacgaggga
actcatggtcatcctggaagccccagcaataagaaaggttaccgtggagaactgggtgcg
gagggtttgccggggatgaaaggaatgccaggcccaactggcaaccgaggaattcctggt
tttgagggaatgcaaggcaacagggggattaaaggaagtcctggtgcctatggagcctca
ggagacacaggaaggaagggaggcaaaggtgataaagggtcacgcatagaccttcacgga
accactggactgagaggagagtatggccttccaggagaaccaggccagaaaggtttaact
ggacaaacgggggacagtggttcacctggttttgatggaatcgaaggcagaaagggagag
gcaggtgatccgggagcaggagggtacccaggcggtgatgggcagaggggcactcctggt
aaccaaggtcaaaaaggctttcctggaactcctggaaaagatggaaacccagggttacct
ggtttcccaggaaacaaaggtttccctgggctgaaaggcctttatggattagatggactg
aagggacagaagggtatccgaggaacaccaggtctggacagcatcggaccagctggggat
ccaggaggcaaaggagaaaggggagagggtggcgaccccaacagccagcctggtgctcct
ggctctgtgggtttgaaaggcttccagggatctcaaggggaccaaggtcaacctggacag
ccgggattgcgtggccccgaaggaccaagcgggaccccggacagaccaggacgcagtggt
gacccgggctctacgggacctaaaggttacctaggtttccctggagccagcggcttccct
ggtgtggatgctccccctggtgagaagggtgtggtgggattaaacgggtatcctggagtc
cccggtaggaaaggattcaaaggagatcaaggatcatttggataccgggggccaaatggg
gtttccggaaagaaaggcgtaaagggagaccaaggagtaatgggacttcccggtattatc
ggtgtgaagggagaaagaggccccgccggtccaaaaggaaacactggacctcaaggtttt
aaaggatttccaggaaaccagggtcctactcccttccctcttcgccttccaggagagagg
ggccatggaggaccacagggtatccaaggacctaagggccacagcggggaaccagggcca
cagggcccccctggtggtgcaggtttcattggacccagtgggcagaagggcatgcccggg
attagtggtcatccaggaacacctggatttcgtggagagtttggaaaagtgggccacccc
ggcctgttgggaatggaaggtcgccgcggtaaccctggtatccccgggctgcctggtatg
ccgggccgcagcgtcagcgtgggttacttgctggtgaaacacagtcaatcggaccagaca
cccatgtgtcccgtgggtatgtctaagctgtgggacggctacagtctgctgtacctcgag
gggcaggaaaaggcccacaaccaggatcttggtttggcgggctcctgtctccctcggttc
aacagcatgcctttcctctactgcaatcctggagacatttgttactacgccagcagaaat
gataagtcctactggctgtcgacgactgctcctcttcccatgatgcccgttgaagaggca
gagatcaaaccgtacataagtcggtgctcggtgtgcgaagctccgtcagtcgccatcgca
atccacagccaagacatcaccatcccgcagtgtcctgcaggctggcgcagcatgtggatc
ggttactctttcctcatgcacacagcggcaggaaatgaaggtggaggtcagtccttgtca
tcgcccggctcttgcctggaggacttccgcacaacacccttcattgagtgtaacggggcc
aaaggctcctgccactacttcgccaacgagcacagtttctggctcacctccatcgatcgg
tcgttccacacggagccggcatcagagacgctcaaagcaggacagctcctgtcacgcatc
agccgctgccaggtctgcatgaagaacttgtga
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integrated database retrieval system
