Pungitius pungitius (ninespine stickleback): 119229234
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Entry
119229234 CDS
T07626
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119229234 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119229234 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119229234 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119229234 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119229234 (col4a1)
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119229234 (col4a1)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119229234 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119229234
NCBI-ProteinID:
XP_037345348
LinkDB
All DBs
Position
10:11245453..11281496
Genome browser
AA seq
1636 aa
AA seq
DB search
MLTPSSTLLLLLAALYGGVDLTGAEGCGASCGKCDCSGVKGAKGERGFPGLQGNMGFPGM
QGHEGPAGPMGPTGDLGDPGAAGLKGVRGPPGRAGFPGNPGLPGINGNDGPPGLHGIPGC
NGTKGDRGRDGTPGFPGLQGPPGIPGISGMKGDPGGVIGIIPLKGDRGYPGKPGLPGPSG
ALGPIGPPGPRGYQGPKGDPGFPGPPGETGDKLSFESAKGDKGDQGYRGPPGPPGLPLQG
FDGHITVQGEKGHPGDKGDNGTCRSDLVGPKGEIGPSGGRGKPGKDGEAGPKGDKGFSGS
IGYPGSPGEKGERGPPGYGDGSPGPAGPRGYPGIQGEKGFPGPQGEAGLPGRHLQGPRGE
SGQKGNTGEKGDRGLEGESLVGPPGQPGDPGSPGPPGLPIEPNECDIEKGAPGPPGPEGL
RGELGQKGDRGDTCVECEAFGPLGSPGPQGPKGDRGPPGLVGGKGEKGVSGSSGQPGIPG
SKGVPGLIGSPGAVGDPGDIFSAPGLKGEKGMPGFSGTPGQSGQDGPPGRDGLPGLPGFK
GEPAKEGIKGERGPDGNPGLSGPPGERGPPGLPGVGRPGESGEKGSQGRPGLPGTPGPAG
TKGEPGKGVSTPGPQGVPGQRGEPGVPGLQGDTGLPGDFGQPGFPGQKGEPGSNGFGSPG
QTGPKGISGIPGAPGLPGEPGRPGQDGLTGQPGTPGQKGDPGQGLPGLKGDQGPQGIIGF
PGEKGSIGLPGVPGREGQTGVPGSQGIKGDIGPPGSPGLVGLPGAPGKGPPGAPGPQGPP
GEPGPYGRDGVKGEKGFPGPPGLDMPGPQGEKGSQGFPGNPGSKGLTGPPGFPGSDGFIG
NQGVKGEMGVMGTPGPQGFPGPPGTSGSTGLRGDPGITGPRGDIGEPGDKGETGDRGLQG
PPGNMSDVDMEHMKGEKGDIGDKGKSGISGEKGHRGLPGNPGGAGKDGEPGSPGQPGEKG
DLGFPGEPGRMGPSGQKGSVGEMGIPGAAGPKGSKGDIGTSGHPGFRGTDGQKGDKGVPG
DPGIGFPGHPGEKGPAGQPGFPGSPGERGLKGHEGMPGQPGLQGSKGEKGLIGYTGQSGR
PGEKGTPGLPGAAGETGRDGRPGEGGLQGPPGVPGEKGNPGVDGIPGSSGDKGDRGFAGQ
SIPGQPGVLGGKGDKGSPGFPGTPGHPGVPGIKGDKGLSGLIGPRGETGERGLTGISLEG
PKGEKGEPGKAGESGSSGGPGPSGVPGRDGQKGDKGDQGPPGFQGESGHKGDPGVTGLSG
QPGLPGIDGQKGERGLQGVPGFPGTRGNFGEIGFKGEVGDRGVPGETGNDGPPGPPGPTI
FIKGDIGLPGKEGLPGPQGPSGLPGQKGQQGMTGVSGPKGDDGIPGYHGQPGSKGEPGLP
GPQGPRGHPGPTGPDGVPGQVGHPGPSSMDHGFLVTRHSQALDVPLCPQGTTLLYDGYSL
LYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMSM
APITGEGIKPFISRCAVCEAPAMVMAIHSQTIRLPECPHGWEALWIGYSFVMHTSAGAEG
SGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFRKPVPSTLKAG
NLRSNVSRCTVCMKRT
NT seq
4911 nt
NT seq
+upstream
nt +downstream
nt
atgctgacaccgtcctccaccctgctgctgctgctggcggctctgtacggcggtgtagac
ctgacgggggctgagggctgcggggcatcatgtggaaaatgtgactgcagtggtgtgaaa
ggagctaagggtgagcgtggatttccaggtcttcaaggtaatatgggttttccagggatg
cagggacatgaaggtcctgcaggaccgatgggccccacgggagatctgggtgatcccgga
gctgctggactgaaaggagtgcgaggtcctcctggtcgggcaggttttccgggaaatcca
ggactaccaggaatcaatggaaatgatggcccaccaggtctgcatggtatcccaggatgc
aatgggactaaaggagacagagggagggatggtactcctggttttcctgggcttcaagga
cctcctggcatccctggaatttctggaatgaagggcgaccctggaggtgtgatcgggatt
attcccctgaaaggagaccgaggataccctggcaaacctggattacctggaccaagtgga
gctcttggacccattggacctccaggacctcgaggctatcaaggacccaaaggggaccct
ggtttccctggccctcccggagaaacgggtgacaagctgtcctttgagagtgcgaaagga
gataagggggatcaaggctaccggggcccaccgggccctccaggactcccgcttcaagga
tttgacggacatatcacagtgcagggtgagaaaggacatccaggagataaaggagacaat
ggcacctgcaggtctgatctagtgggtccaaaaggggagatcggtcccagtggaggaaga
ggtaaacctggcaaggatggagaggccgggccaaagggagacaaaggcttctccggatca
attggataccctggttccccgggtgaaaagggagaaaggggaccaccaggttatggtgat
ggttctcctggtcctgctggtcctcgtggttatccagggatacaaggagaaaaaggtttt
cctggtcctcagggagaagcaggtctaccaggccgccacctccaagggcctcgaggggag
agcggtcagaagggaaacactggtgagaaaggagacaggggtttagaaggagagtctctc
gttggacctccaggacaaccaggggaccctggatcgcctggaccacctggactaccgatc
gaacctaatgaatgtgacatcgagaaaggagctcctggcccacctggacctgaagggtta
cgaggggaattgggacagaaaggtgatagaggagatacctgtgttgagtgtgaagccttt
ggcccacttggatcacctggaccccaaggaccaaaaggagatcggggacctcctgggcta
gtaggcggcaagggagaaaagggtgtgtccggctcttctggacaacctggaattcctggc
tctaaaggtgttcctgggttgatcgggtcccctggtgctgttggtgatcccggagatatt
ttctcagctcctggtctgaagggggaaaagggtatgcctggtttttctggtacaccaggc
caatccggacaggatggaccgccagggagagatggccttccaggtttacccggcttcaaa
ggagaaccagccaaagaaggcatcaagggtgagcgtgggccagatgggaaccctggtctt
agtggccctcccggagagaggggtccacctggccttccaggcgttggtcgaccaggcgag
agtggagagaaaggcagtcaggggagaccaggccttcctggaacccctggaccagctggt
acaaaaggtgagccaggtaagggtgttagcactcctgggcctcagggagtgcctggacaa
cgtggagaacctggagtacctgggcttcaaggtgacacaggcctgcctggagactttggg
cagccaggttttcctggacagaaaggtgaacccggatccaatggatttggatctccaggc
caaactggcccaaaaggaatcagtggaattccaggagctccaggattaccaggagagcct
ggaagaccaggacaggatggcttgactggacaacctggtacacctgggcaaaaaggtgac
ccaggacagggtcttccaggcctaaaaggtgatcagggtcctcaaggtattattggcttc
cctggagagaagggttctattggactacccggtgttcctggaagagaaggccaaacaggg
gtgccaggatctcaaggaatcaaaggtgacatcggacccccaggatcacctggacttgtt
ggtttaccaggtgctccaggtaaaggtccccctggggctcctggaccacaaggacctcct
ggagagccaggaccatatggtagggacggtgttaagggagaaaagggtttcccaggtcct
cctggtctcgacatgccagggcctcagggagagaagggaagccaaggtttcccaggaaac
ccaggttctaaaggactaactgggccaccaggcttccctgggagtgacggattcattgga
aaccaaggtgttaaaggtgaaatgggtgtcatggggacaccgggaccacaaggatttcct
ggacctcctggtacatctggatctactggactcagaggtgatcccggtattactggacct
agaggtgatattggagagcctggagataaaggagaaactggagatcgaggtcttcaggga
cctcctgggaacatgagtgacgttgacatggagcacatgaagggggaaaagggagacatt
ggagacaaaggtaaatctggcatttctggagagaagggccatcgtggacttcctggtaac
cctggaggggcaggcaaagatggggagcctggatcacctggacaaccaggtgagaaaggc
gaccttggttttccaggagagcctggcaggatgggaccatctggtcagaaaggcagtgta
ggagagatgggaataccaggtgcggctggtccaaagggcagtaaaggagatattggtaca
tcgggacatcctggattcagaggcacagacggacagaaaggtgacaagggagtacctggt
gatccaggtattgggtttccaggacatccaggagaaaagggcccagcgggccagccaggc
ttcccaggatcaccgggagagagggggctgaaggggcacgagggaatgcccggccagcca
ggactgcagggatccaaaggagaaaaaggactcattggttatacaggtcagtcaggtaga
ccaggtgaaaagggaaccccaggactgccaggagctgctggagaaactggccgtgatggt
cggcctggtgaaggaggcttgcagggaccgcctggtgttcccggagagaagggaaatcct
ggagtggatggtattcctggatcctcaggggacaaaggagaccgaggttttgctggacag
agtatccctggacaacctggtgtgcttggtggcaaaggtgacaaaggtagtcccggcttc
cctggcactccaggccatcctggtgttcccggtatcaaaggtgacaagggactttcaggc
ttaatcggaccccgaggtgagacaggagagagggggttgacaggtatctctctggaaggc
cctaagggagagaagggagagcccggaaaagctggagaatcagggtcctcaggaggacca
ggaccctctggggtgccaggaagagacggccaaaagggagacaagggagaccagggcccc
cctggtttccagggagagtcaggacataagggtgaccctggagttactggactttctgga
caacctggtcttcctggtatcgatggacagaagggggaaaggggactgcagggtgtccct
ggcttcccaggtacaaggggtaattttggtgagattggattcaaaggagaagttggagac
agaggagtcccaggagaaacgggcaacgatggacctcctggtccccccggccccaccatt
ttcatcaaaggggatatcgggctcccagggaaagaaggcttaccaggtcctcaggggcca
tctgggcttcctggacagaaaggacagcaaggtatgacaggtgtttcgggcccaaaaggt
gacgatggtattcccgggtatcatggtcagcctggatccaaaggagagccgggcctgcca
gggccgcagggacccagaggacaccctggccccacaggacctgacggtgtcccaggccaa
gtgggtcatcctggcccctcgtccatggatcacggattcctggtgacccgtcacagccaa
gcgttggacgttcccctctgtccgcaggggaccacgctcctatatgacggctactccttg
ctctacgttcagggcaacgaacgctcccatggacaggacttgggtacggcgggcagctgt
ctaaggaagttcagccccatgcccttcctgttctgtaacatcaacaacgtgtgcaacttt
gcttctcgtaacgactactcctactggctcacctcccctgagcccatgcccatgagcatg
gcacccatcactggtgaaggcatcaaacccttcatcagcaggtgtgcagtgtgtgaagcc
ccagccatggtgatggcaattcacagtcagaccatcaggctcccagaatgccctcacggc
tgggaagctctgtggattggctactcctttgtcatgcacaccagtgctggtgctgagggc
tcaggtcaggctctggcctcccctggatcctgtctggaggaattccgcagtgccccattc
atcgagtgtcacggccgtgggacctgcaactactacgccaactcttacagcttttggctt
gccaccattgaagacagtgagatgtttaggaaacctgtcccttcaacgctcaaagccggc
aacctccgatcaaacgtaagccgttgtactgtgtgtatgaagaggacataa
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integrated database retrieval system
