KEGG   Pungitius pungitius (ninespine stickleback): 119229234
Entry
119229234         CDS       T07626                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug04382  Cornified envelope formation
ppug04510  Focal adhesion
ppug04512  ECM-receptor interaction
ppug04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    119229234 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    119229234 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    119229234 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    119229234 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ppug04147]
    119229234 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:ppug00536]
    119229234 (col4a1)
Exosome [BR:ppug04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   119229234 (col4a1)
Glycosaminoglycan binding proteins [BR:ppug00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   119229234 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 119229234
NCBI-ProteinID: XP_037345348
LinkDB
Position
10:11245453..11281496
AA seq 1636 aa
MLTPSSTLLLLLAALYGGVDLTGAEGCGASCGKCDCSGVKGAKGERGFPGLQGNMGFPGM
QGHEGPAGPMGPTGDLGDPGAAGLKGVRGPPGRAGFPGNPGLPGINGNDGPPGLHGIPGC
NGTKGDRGRDGTPGFPGLQGPPGIPGISGMKGDPGGVIGIIPLKGDRGYPGKPGLPGPSG
ALGPIGPPGPRGYQGPKGDPGFPGPPGETGDKLSFESAKGDKGDQGYRGPPGPPGLPLQG
FDGHITVQGEKGHPGDKGDNGTCRSDLVGPKGEIGPSGGRGKPGKDGEAGPKGDKGFSGS
IGYPGSPGEKGERGPPGYGDGSPGPAGPRGYPGIQGEKGFPGPQGEAGLPGRHLQGPRGE
SGQKGNTGEKGDRGLEGESLVGPPGQPGDPGSPGPPGLPIEPNECDIEKGAPGPPGPEGL
RGELGQKGDRGDTCVECEAFGPLGSPGPQGPKGDRGPPGLVGGKGEKGVSGSSGQPGIPG
SKGVPGLIGSPGAVGDPGDIFSAPGLKGEKGMPGFSGTPGQSGQDGPPGRDGLPGLPGFK
GEPAKEGIKGERGPDGNPGLSGPPGERGPPGLPGVGRPGESGEKGSQGRPGLPGTPGPAG
TKGEPGKGVSTPGPQGVPGQRGEPGVPGLQGDTGLPGDFGQPGFPGQKGEPGSNGFGSPG
QTGPKGISGIPGAPGLPGEPGRPGQDGLTGQPGTPGQKGDPGQGLPGLKGDQGPQGIIGF
PGEKGSIGLPGVPGREGQTGVPGSQGIKGDIGPPGSPGLVGLPGAPGKGPPGAPGPQGPP
GEPGPYGRDGVKGEKGFPGPPGLDMPGPQGEKGSQGFPGNPGSKGLTGPPGFPGSDGFIG
NQGVKGEMGVMGTPGPQGFPGPPGTSGSTGLRGDPGITGPRGDIGEPGDKGETGDRGLQG
PPGNMSDVDMEHMKGEKGDIGDKGKSGISGEKGHRGLPGNPGGAGKDGEPGSPGQPGEKG
DLGFPGEPGRMGPSGQKGSVGEMGIPGAAGPKGSKGDIGTSGHPGFRGTDGQKGDKGVPG
DPGIGFPGHPGEKGPAGQPGFPGSPGERGLKGHEGMPGQPGLQGSKGEKGLIGYTGQSGR
PGEKGTPGLPGAAGETGRDGRPGEGGLQGPPGVPGEKGNPGVDGIPGSSGDKGDRGFAGQ
SIPGQPGVLGGKGDKGSPGFPGTPGHPGVPGIKGDKGLSGLIGPRGETGERGLTGISLEG
PKGEKGEPGKAGESGSSGGPGPSGVPGRDGQKGDKGDQGPPGFQGESGHKGDPGVTGLSG
QPGLPGIDGQKGERGLQGVPGFPGTRGNFGEIGFKGEVGDRGVPGETGNDGPPGPPGPTI
FIKGDIGLPGKEGLPGPQGPSGLPGQKGQQGMTGVSGPKGDDGIPGYHGQPGSKGEPGLP
GPQGPRGHPGPTGPDGVPGQVGHPGPSSMDHGFLVTRHSQALDVPLCPQGTTLLYDGYSL
LYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMSM
APITGEGIKPFISRCAVCEAPAMVMAIHSQTIRLPECPHGWEALWIGYSFVMHTSAGAEG
SGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFRKPVPSTLKAG
NLRSNVSRCTVCMKRT
NT seq 4911 nt   +upstreamnt  +downstreamnt
atgctgacaccgtcctccaccctgctgctgctgctggcggctctgtacggcggtgtagac
ctgacgggggctgagggctgcggggcatcatgtggaaaatgtgactgcagtggtgtgaaa
ggagctaagggtgagcgtggatttccaggtcttcaaggtaatatgggttttccagggatg
cagggacatgaaggtcctgcaggaccgatgggccccacgggagatctgggtgatcccgga
gctgctggactgaaaggagtgcgaggtcctcctggtcgggcaggttttccgggaaatcca
ggactaccaggaatcaatggaaatgatggcccaccaggtctgcatggtatcccaggatgc
aatgggactaaaggagacagagggagggatggtactcctggttttcctgggcttcaagga
cctcctggcatccctggaatttctggaatgaagggcgaccctggaggtgtgatcgggatt
attcccctgaaaggagaccgaggataccctggcaaacctggattacctggaccaagtgga
gctcttggacccattggacctccaggacctcgaggctatcaaggacccaaaggggaccct
ggtttccctggccctcccggagaaacgggtgacaagctgtcctttgagagtgcgaaagga
gataagggggatcaaggctaccggggcccaccgggccctccaggactcccgcttcaagga
tttgacggacatatcacagtgcagggtgagaaaggacatccaggagataaaggagacaat
ggcacctgcaggtctgatctagtgggtccaaaaggggagatcggtcccagtggaggaaga
ggtaaacctggcaaggatggagaggccgggccaaagggagacaaaggcttctccggatca
attggataccctggttccccgggtgaaaagggagaaaggggaccaccaggttatggtgat
ggttctcctggtcctgctggtcctcgtggttatccagggatacaaggagaaaaaggtttt
cctggtcctcagggagaagcaggtctaccaggccgccacctccaagggcctcgaggggag
agcggtcagaagggaaacactggtgagaaaggagacaggggtttagaaggagagtctctc
gttggacctccaggacaaccaggggaccctggatcgcctggaccacctggactaccgatc
gaacctaatgaatgtgacatcgagaaaggagctcctggcccacctggacctgaagggtta
cgaggggaattgggacagaaaggtgatagaggagatacctgtgttgagtgtgaagccttt
ggcccacttggatcacctggaccccaaggaccaaaaggagatcggggacctcctgggcta
gtaggcggcaagggagaaaagggtgtgtccggctcttctggacaacctggaattcctggc
tctaaaggtgttcctgggttgatcgggtcccctggtgctgttggtgatcccggagatatt
ttctcagctcctggtctgaagggggaaaagggtatgcctggtttttctggtacaccaggc
caatccggacaggatggaccgccagggagagatggccttccaggtttacccggcttcaaa
ggagaaccagccaaagaaggcatcaagggtgagcgtgggccagatgggaaccctggtctt
agtggccctcccggagagaggggtccacctggccttccaggcgttggtcgaccaggcgag
agtggagagaaaggcagtcaggggagaccaggccttcctggaacccctggaccagctggt
acaaaaggtgagccaggtaagggtgttagcactcctgggcctcagggagtgcctggacaa
cgtggagaacctggagtacctgggcttcaaggtgacacaggcctgcctggagactttggg
cagccaggttttcctggacagaaaggtgaacccggatccaatggatttggatctccaggc
caaactggcccaaaaggaatcagtggaattccaggagctccaggattaccaggagagcct
ggaagaccaggacaggatggcttgactggacaacctggtacacctgggcaaaaaggtgac
ccaggacagggtcttccaggcctaaaaggtgatcagggtcctcaaggtattattggcttc
cctggagagaagggttctattggactacccggtgttcctggaagagaaggccaaacaggg
gtgccaggatctcaaggaatcaaaggtgacatcggacccccaggatcacctggacttgtt
ggtttaccaggtgctccaggtaaaggtccccctggggctcctggaccacaaggacctcct
ggagagccaggaccatatggtagggacggtgttaagggagaaaagggtttcccaggtcct
cctggtctcgacatgccagggcctcagggagagaagggaagccaaggtttcccaggaaac
ccaggttctaaaggactaactgggccaccaggcttccctgggagtgacggattcattgga
aaccaaggtgttaaaggtgaaatgggtgtcatggggacaccgggaccacaaggatttcct
ggacctcctggtacatctggatctactggactcagaggtgatcccggtattactggacct
agaggtgatattggagagcctggagataaaggagaaactggagatcgaggtcttcaggga
cctcctgggaacatgagtgacgttgacatggagcacatgaagggggaaaagggagacatt
ggagacaaaggtaaatctggcatttctggagagaagggccatcgtggacttcctggtaac
cctggaggggcaggcaaagatggggagcctggatcacctggacaaccaggtgagaaaggc
gaccttggttttccaggagagcctggcaggatgggaccatctggtcagaaaggcagtgta
ggagagatgggaataccaggtgcggctggtccaaagggcagtaaaggagatattggtaca
tcgggacatcctggattcagaggcacagacggacagaaaggtgacaagggagtacctggt
gatccaggtattgggtttccaggacatccaggagaaaagggcccagcgggccagccaggc
ttcccaggatcaccgggagagagggggctgaaggggcacgagggaatgcccggccagcca
ggactgcagggatccaaaggagaaaaaggactcattggttatacaggtcagtcaggtaga
ccaggtgaaaagggaaccccaggactgccaggagctgctggagaaactggccgtgatggt
cggcctggtgaaggaggcttgcagggaccgcctggtgttcccggagagaagggaaatcct
ggagtggatggtattcctggatcctcaggggacaaaggagaccgaggttttgctggacag
agtatccctggacaacctggtgtgcttggtggcaaaggtgacaaaggtagtcccggcttc
cctggcactccaggccatcctggtgttcccggtatcaaaggtgacaagggactttcaggc
ttaatcggaccccgaggtgagacaggagagagggggttgacaggtatctctctggaaggc
cctaagggagagaagggagagcccggaaaagctggagaatcagggtcctcaggaggacca
ggaccctctggggtgccaggaagagacggccaaaagggagacaagggagaccagggcccc
cctggtttccagggagagtcaggacataagggtgaccctggagttactggactttctgga
caacctggtcttcctggtatcgatggacagaagggggaaaggggactgcagggtgtccct
ggcttcccaggtacaaggggtaattttggtgagattggattcaaaggagaagttggagac
agaggagtcccaggagaaacgggcaacgatggacctcctggtccccccggccccaccatt
ttcatcaaaggggatatcgggctcccagggaaagaaggcttaccaggtcctcaggggcca
tctgggcttcctggacagaaaggacagcaaggtatgacaggtgtttcgggcccaaaaggt
gacgatggtattcccgggtatcatggtcagcctggatccaaaggagagccgggcctgcca
gggccgcagggacccagaggacaccctggccccacaggacctgacggtgtcccaggccaa
gtgggtcatcctggcccctcgtccatggatcacggattcctggtgacccgtcacagccaa
gcgttggacgttcccctctgtccgcaggggaccacgctcctatatgacggctactccttg
ctctacgttcagggcaacgaacgctcccatggacaggacttgggtacggcgggcagctgt
ctaaggaagttcagccccatgcccttcctgttctgtaacatcaacaacgtgtgcaacttt
gcttctcgtaacgactactcctactggctcacctcccctgagcccatgcccatgagcatg
gcacccatcactggtgaaggcatcaaacccttcatcagcaggtgtgcagtgtgtgaagcc
ccagccatggtgatggcaattcacagtcagaccatcaggctcccagaatgccctcacggc
tgggaagctctgtggattggctactcctttgtcatgcacaccagtgctggtgctgagggc
tcaggtcaggctctggcctcccctggatcctgtctggaggaattccgcagtgccccattc
atcgagtgtcacggccgtgggacctgcaactactacgccaactcttacagcttttggctt
gccaccattgaagacagtgagatgtttaggaaacctgtcccttcaacgctcaaagccggc
aacctccgatcaaacgtaagccgttgtactgtgtgtatgaagaggacataa

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