Pungitius pungitius (ninespine stickleback): 119229914
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Entry
119229914 CDS
T07626
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119229914
03015 mRNA surveillance pathway
119229914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119229914
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119229914
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119229914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
119229914
NCBI-ProteinID:
XP_037346635
LinkDB
All DBs
Position
8:16617664..16624374
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AA seq
490 aa
AA seq
DB search
MATDSWAQAVDEQEAAAESIGSLQIKDKPEENGTAVKATDSSSAAVSSEVAVEKKATDDD
DNDKDDKAAQSLLNKLIRNNLVNNTNQVEVLQKDPNSPLYSVKSFEELRLKPQLLQGVYG
LGFNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHVDPNKRYPQCLCVS
PTYELALQTGKVIELMGKHYPEVRLVYAIRGNKLQRGVKLEEQIVIGTPGTMLDWCGKFK
FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQMLLFSATFEETVWNFAQRIV
PEPNIIKLKREEETLDTIKQYFVLCNSREEKFQALCNIYGAITIAQAMIFCHTRKTAGWL
AGELSREGHQVALLSGEMQVEQRAAVIDRFRDGKEKVLVTTNVCARGIDVEQVSVVINFD
LPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSKMSMNILNRIQEHFSKKIERLDTD
DLDEIEKIAG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggccacggactcctgggcacaagcagtagacgagcaagaagccgcggcggaatcgatc
ggtagcctccaaataaaggacaagccagaggaaaatggaactgctgtgaaagcaacagac
tccagcagcgctgctgtcagctcagaagttgctgtagaaaaaaaggcaaccgatgacgat
gacaacgacaaagatgacaaagcggcacagtcgttattgaacaagctcatccggaataat
ctggtcaataacacaaatcaagtggaagttcttcagaaggatcccaactctccgctctac
tctgttaaatccttcgaggagttgcgactcaaaccgcagctgcttcagggcgtgtacggc
ttgggtttcaacagaccatccaaaatccaggagactgccttacctatgatgctggctgaa
cctccacagaatctgattgctcagtcacagtcgggaacagggaaaactgcagcttttgtc
ctggcaatgctcagtcatgtagatccaaacaaaagatatccccagtgcctgtgtgtgtca
cccacctatgaactggcccttcagacaggcaaggtaatcgagctcatgggcaaacactat
cctgaggtcagactagtctacgccatcagaggaaacaaattgcagcggggcgtgaagctg
gaggaacagatcgttattggcacaccaggtaccatgctggactggtgcggtaaattcaag
ttcatagaccccaagaagataaaggtgtttgtgctcgacgaggctgatgtcatgatcgca
acacagggccaccaggaccagagcatccgcatccaaaggatgctgcctaaaaactgccag
atgttgttgttctcagccacatttgaagagactgtgtggaactttgcccagcgcattgtg
cctgaacccaacatcatcaagttgaagagggaggaggagacgctggatacaatcaaacag
tactttgtgttgtgtaacagcagggaggagaagttccaagcgctctgtaacatctacgga
gctatcaccatcgcccaggccatgatcttctgccatacaaggaagactgctggctggctt
gctggggagctgtccagagagggccaccaggtggcgctgctcagtggggagatgcaagtg
gagcagagggctgctgtcatcgaccgcttcagagatggcaaggagaaagtcctggtcacc
acaaatgtttgtgccagaggcattgatgtggagcaggtttctgtggtgatcaactttgac
ttgccagtagacaaggatggtaacccagacaacgagacgtacctgcacaggattggtcgc
acgggtcgatttggcaaaaggggactggccatcaacatggtggacagcaagatgagcatg
aacatcctcaacaggatccaggagcatttcagtaagaaaattgagagactagacacagat
gacctggacgaaatcgagaagattgccggctaa
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