Pungitius pungitius (ninespine stickleback): 119229956
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Entry
119229956 CDS
T07626
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119229956 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119229956 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119229956 (col2a1b)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119229956 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
119229956
NCBI-ProteinID:
XP_037346733
LinkDB
All DBs
Position
8:complement(6202092..6236820)
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AA seq
1490 aa
AA seq
DB search
MFSFMDSRTVLLLVATHVCLLAVVRCQEDDQEDAKSCTQDGDRYSDNDVWKPEPCRICVC
DTGTVLCDQILCTELKDCSKPEIPFGECCPICASDLSPPIGSPGAKGQKGEPGDITDVVG
PRGPSGPMGPPGEQGPRGLRGDKGEKGSLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSG
PMGPRGPPGPSGKPGDDGEAGKPGKPGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
SKGETGSLGSKGESGAPGENGAPGPMGPRGLPGERGRPGSSGVAGARGNDGLPGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEFGPVG
MQGITGPQGEEGKRGPRGEAGAAGPLGPPGERGTPGNRGFPGQDGLAGPKGAPGERGPSG
ASGPKGANGDPGRPGEAGLLGARGLTGRPGDAGPQGKVGPSGGSGEDGRPGPPGPQGARG
QPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGPSGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGSQGLQG
PRGLPGTPGTDGPKGAIGPGGAGGAQGPPGLQGMPGERGGAGVPGPKGDRGDLGEKGPEG
ASGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGTPGDRGETGPPGPAGFAG
PPGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPSGATG
FPGAAGRVGPPGPNGNPGPAGPAGPAGKDGPKGVRGDNGPMGRQGDAGLRGPAGTPGEKG
DAGEDGPPGPLGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGASGAPGVSG
PVGPTGKQGDRGESGAQGPSGAPGPAGARGMPGPQGPRGDKGEGGETGERGQKGHRGFTG
LQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPSGKDGGNGLPGPIGPPGPRGRSGETG
PSGPAGNPGPPGLPGPPGPGIDMSAFAGLGQTEKSSDPLRYMRADQASGNLRQHDAEVDA
TLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTVDAIKVFCDM
ETGESCVKSKPDSIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAVNTAAIQMTF
LRLLSTEASQNLTYHCKNSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVIEDG
CTKHTGQWGKTVVEYRSQKTSRLPIVDIAPMDIGGSDQEFGVEVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccacgtttgtcta
ttagccgttgtaagatgtcaagaagacgaccaggaggatgctaaaagctgcacacaagat
ggagatcgttatagcgacaacgacgtgtggaaaccagagccttgccgcatctgtgtgtgt
gacactggaaccgtcctctgtgatcagatcctctgcacggagctaaaagactgctccaaa
cccgaaatcccattcggagagtgttgccccatctgcgcatctgacctgtctccacccatt
ggatcacctggagctaagggtcagaaaggtgaacccggagacattaccgatgttgtagga
ccgagaggaccaagtggcccaatgggcccaccaggagagcaaggaccccgtggattgaga
ggagacaagggagagaagggaagccttggcccccgcggcagagatggtgagcctggcacc
cccgggaaccccggcccccccggaccccccggacccaatggaccccctggccttggcgga
aactttgctgctcagatggctggtggttttgacgagaaagctggcggcgctcagatgggc
gtgatgcaaggaccaatgggcccgatgggtcccagaggaccacccggccccagcggatca
cctggcccacaaggtttccaaggcaacccaggagaggctggagagcctggacagtctggc
ccgatgggtccccgtggcccccctggaccttctggaaaacctggagatgatggtgaggct
ggcaagcctggtaaaccaggcgaccgtggaccttctggacctcagggggctcgtggattc
ccagggactcctggcctgccgggcatcaaggggcacagaggttatccaggtcttgatggt
tcaaagggagagactggatctcttggctccaagggagagtccggtgctcccggagagaac
ggcgctcccgggcccatgggaccccggggtttgcctggtgagagaggacgtccgggatcc
agtggagtcgctggagcacgcggaaatgatggcttgccaggacctgctggacccccaggc
cccgttggtccctctggagctccaggcttccctggctctcctggttcaaagggggaggct
ggtcctactggtgctcgtggtcctgagggtgctcagggaccccgtggagagtctgggact
cccggatcatccggaccgtctggtgcttctggaaaccctggtactgatggtatcccggga
tccaaaggatcagctggtgctcctggtattgctggtgctcctggtttccctggacctcgt
ggacctcccgggcctcagggagcaactggacctctcgggcccaaaggaacatctggagac
ccgggtatcccaggcttcaagggagaggctggacctaaaggagaatttggaccggttggt
atgcagggaattactggcccacaaggagaggaaggcaagagaggaccacggggggaggct
ggtgcagctggaccacttgggcctcctggagagagaggaacccctggtaaccgcggtttc
cctggtcaagacggtcttgctggtcccaagggagcccctggtgagcgtggcccctctggt
gcaagtggtcccaagggtgccaacggtgaccctggtcgtcccggagaggctggtctgctt
ggtgcccgaggcctgaccggacgccccggagacgctggtcctcaaggcaaagtcggacct
tctggaggctctggtgaggacggtcgcccgggacccccgggccctcagggagcccgtggg
cagccgggtgtcatgggattccccggaccaaagggagcaactggtgaacctggcaagtct
ggagagaaaggtctgggtggcgctcctggtctgaggggtctgcctggcaaagatggagaa
accggcccgtctggaccccccggccctgctggcccggctggagagcgaggagagcaagga
cagcccggtccctcgggattccagggtcttcctggacctcctggcccccctggtgaggga
ggcaagcctggagaccagggtgtccctggagaaggaggagcggctggtgctactggaccc
agaggtgagcgcggtttccccggagagcgaggagctgccggctctcagggtctacaggga
ccccgaggcctgcctggaactcctggaactgacggacccaagggagccattggaccgggt
ggtgctggtggagctcagggaccccctggcctgcagggtatgcccggagaaaggggaggt
gctggcgttcctggacccaagggagacagaggtgacctcggagagaaaggacctgaaggt
gcttctggcaaagatggtggaagaggtctcactggtcccatcggtcctcctggtcctggt
ggtcccaatggcgagaagggtgaatctggtcctgctggtccttctggagctcctggtact
cgcggaactcctggggacagaggagagactggacctcctgggcctgctggatttgctgga
cctcctggttctgacggtcagccgggaatcaagggagagcagggagaatctggacagaag
ggtgatgctggagctcctggacctcaaggaccttccggtgcccctggacctgcaggtcct
accggtgtttttggacctaaaggtgctcggggtgctcagggaccttctggagcaactggt
ttccctggagctgctggccgagttggaccccctggtcccaatggtaatcctggacccgct
ggacctgccggccccgccggtaaagatggccccaagggtgtgaggggagataatgggccc
atgggccgacagggtgacgccgggctgcgcggtccagctggtactcctggagagaaggga
gatgctggagaggatggacctcctggtcccctcggtccttcagggcctcagggtttgggt
ggtcagcgtggtatcgtcggtctgcccggacagcgtggtgagagaggtttccctggtctg
cctggtccttctggcgagcctggaaagcagggagctcctggtggcagtggagaccgtggc
ccccccggacccgttggaccacctggactcactggacctgcaggagagcctggccgagag
ggcaacgctggatccgatggacctcccggtagagatggtgctactggaatcaagggtgac
cgtggcaacactggtcctgctggtgctcctggtgcttcaggggctcctggtgtttccggc
cccgttggtcccaccggcaaacagggagacagaggagagagtggtgcacaaggaccttct
ggggctccaggacctgctggagccagaggaatgcctggacctcaaggaccccgcggtgac
aagggtgagggtggagagactggtgagagaggacagaagggacacagaggcttcactggt
ctgcagggtctgcccggacctccgggtcaagctggagatcagggggctaccggacccgct
ggaccttctggacaaagaggaccacctggacccgttggccccagtggaaaggatggtgga
aacggactcccaggacccattggaccacccggacctcgtggtcgtagtggagagaccggt
ccctctgggcctgctggaaaccctggaccccccggacttcccggcccccccggccccggc
attgacatgtctgccttcgctggcctgggtcaaactgaaaagtcctccgatcctctcagg
tacatgagggccgaccaggcttccggaaacctccgtcagcacgatgccgaggtcgacgcc
acgctaaaatctctcaacaaccagattgagaacatccgcagcccggagggatccaggaag
aacccggctcgcacctgcagagacctgaagctctgccacccggactggaagagcggagac
tactggattgatcccaatcagggctgcaccgtggatgcgatcaaggtcttctgcgacatg
gagacaggagagtcctgcgtcaaatccaagcctgacagcatccctcgcaagaactggtgg
tccagcaagagcaaggaccgcaaacacgtctggttcggagagacgatgaacggaggattc
cacttcagctatggtgatgacagcctggcagttaacaccgctgccattcagatgaccttc
ctgagactgctgtccaccgaggcgtctcaaaacctcacctaccactgtaagaacagcgtg
gcctacatggacgcctccacaggcaacctgaagaaggctctcctgctgcagggctccaac
gacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatagaggacggc
tgcacgaaacatacgggacagtgggggaagacggtggtggaatacagatcgcagaagacc
tctcgcctgccaatcgtagacattgcccccatggatatcggagggtcagaccaggagttc
ggggtcgaagtcggggctgtctgcttcttgtaa
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integrated database retrieval system
