KEGG   Pungitius pungitius (ninespine stickleback): 119230011
Entry
119230011         CDS       T07626                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    119230011 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppug03019]
    119230011 (rae1)
   03036 Chromosome and associated proteins [BR:ppug03036]
    119230011 (rae1)
Messenger RNA biogenesis [BR:ppug03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     119230011 (rae1)
Chromosome and associated proteins [BR:ppug03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    119230011 (rae1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WDR55 Beta-prop_EML_2 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I WD40_Gbeta Beta-prop_EML Beta-prop_TEP1_C Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st WD40_RFWD3 Beta-prop_Aladin PAC11 ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_ACSF4 Beta-prop_RSE1_2nd ASA1 DSE1_N Beta-prop_SPT8 NBCH_WD40 ExoI_SH3 Beta-prop_WDR41
Other DBs
NCBI-GeneID: 119230011
NCBI-ProteinID: XP_037346822
LinkDB
Position
8:complement(19568462..19572759)
AA seq 369 aa
MSLFGATSGFGAAGAGVFGNATTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDACWSDDGSKVFTASCDKTAKMWDLNSNQA
LQIAQHDGPIKSIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERSYCADVVY
PMAVVATADRGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNSNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRSAAE
ELKPRNKKW
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgagtttatttggggcaacctccgggttcggagcagcgggggcaggtgtctttgggaac
gcaacgacagacagccataatcccatgaaggatgttgaggtgacgtcccctccagatgac
agcattagctgtctggctttcagtccccccaccatgccagggaacttcctcattggggga
tcctgggccaacgatgtccggtgctgggaggttcaggacaatgggcagactgtacccaaa
gcccaacagatgcacaccggcccggtgctggatgcatgctggagtgacgacgggagtaag
gtcttcactgcctcctgtgacaaaaccgccaagatgtgggatcttaacagcaatcaggct
ttgcagattgcacagcatgacggcccaatcaaatccatccactggattaaagctccgaac
tacagctgtatcatgaccggcagttgggacaaaacactgaagttttgggacacccggtct
ccaaatcccatgatgtctttgcagatgccagagagatcctactgtgctgatgttgtgtat
cccatggctgtggttgccacagcggatagaggcctgatagtgtaccagctggagaaccag
ccctctgaatttcgcagaatcgattctcctctcaaacatcagcaccgctgtgttgccata
ttcaaggacaagcagaacaagcccactggctttgcactaggaagcattgagggccgtgtg
gccatccactatatcaaccccccaaacccggccaaagataacttcacctttaagtgtcac
aggtcgaatggaaccaacacgaccactccacaggacatctacgccgtgaatgccatctcc
ttccaccctgtccacggcacactggctaccgtgggctcagatggacgcttcagcttttgg
gacaaagacgcgcgcacaaagttgaagacctcagagcagctcgatcagcccattacagcg
tgctgcttcaacagcaacggcaacatctttgcatatgcctccagttacgactggtcaaag
ggccacgagtactacaacccccagaaaaagaactacatcttcttgaggagtgctgccgag
gagctgaagcctcggaacaagaaatggtga

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