Pungitius pungitius (ninespine stickleback): 119230094
Help
Entry
119230094 CDS
T07626
Symbol
pbrm1l
Name
(RefSeq) polybromo 1, like
KO
K11757
protein polybromo-1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119230094 (pbrm1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119230094 (pbrm1l)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119230094 (pbrm1l)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119230094 (pbrm1l)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
119230094 (pbrm1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
DUF7877
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
119230094
NCBI-ProteinID:
XP_037346988
LinkDB
All DBs
Position
8:complement(21442981..21453593)
Genome browser
AA seq
1642 aa
AA seq
DB search
MSASSKRRRATSPSSSVSGGGDLDDSSSTPGSGRKRRRISNVSPVDTIAVCHELFNAVRD
YKDGQGRQLCEVFQRVPKRRNQPDYYEAVSQPIDMTKILYKLKSEDYNDVEQLTADFQLM
FNNAKSFYKSDTEEYQAACKLWEVYLQTRNEFVQPGDGDEDDEDGDDMMDNPGMSNEDET
PTGNLKELFEQLLEALVSHADPSGRLVSELFQKLPSKVHYPDYYAIIKEPIDLRTIAQRI
QIGYYKSVNAMAKDIDLMAKNAKTYNEPGSQVFKDANTIKKVFIQRKTELEHAEPTKSSL
RIRNRRSGQGDQLSGVSVALHYGSESEDDPVLSGSVCYDEGESEAESQSSSMEMSNPIFQ
LYEAVRGARNNQGQVFSEPFQQLPSRREYPDYYQQIKQPIALQQIRAKMKNCEYESVEQM
EADLTLMFENAKRYNMPNSSIYKRAIRLQQILQAKKRGLVRRDDEEGDSILSSDAGSIKR
KSHKKNVKKNRMKTLYAAVTEAVEAGTNRRLCDLFMVKPSKKDYPDYYKVILEPMDLKTI
EHSIHTERYVSEDALMEDMRLMFRNARHYNEEGSQVYNDADILEKILKDKRKEMGPFPEE
EDLVSPKLKLRKIGVSPKKSKYLTPLQQRLNELYDAVRNFTDRRGRRLSTIFLRLPSRAE
LPDYYATIKRPIDMERIRSHMAAGRYQDVDAMVEEFSLMFNNACIYNEPESLIYRDALVL
HRVLLGTRKQQEGSEDFGPPNVGHLVRELIRSLFVSVMGHQDEEGRCYSDSLAEIPAVDP
AGPEKPPLNFDVIRVNVERGHYRRLDVFQEHMFEVLEKGRRLHRTDSEIFEDAVELQHFF
IKIRDELCKNGEILQSSSLIYTSKHLHSDVEQEKREKIPKEIEEDRLKAEEEKQENKEGV
KAENLQGQSGQSDSESERVYTQDCSFENITYHVGDFVYVEPSEVNLKPHIVCIERLWEDK
AGGKWLYGCWFYRPSETFHLATRKFLEKEVFKSDYYNKVSLGKVLGKCVVLCVKDYFKMQ
AEGYRAEDVYVCESRYAARNKSFKKIKIMAVPVSSVKLVPREVPLPVVRVASMFAKPDYD
KLTISYAGSGGAIDKEKEDVPIEMSGADPGCQHYEQLLCDKMWFKVGDCVYIQSHGLSKP
RVARIEKLWVQNGTTFFFGPIFIHPEETEHEPTKMFYKREVFLSHLEETLPITCVIGKCL
VSSFKDYLSCRPTEVSEEDVLLCESRYIDVEKQMKKFKGLKRFSYSSKVVEDEIYYFRKL
IVPQKEASPLLDKKINELELKLADIEDGDDDMEDMDDDDEAPQTPSMPQMQTPLANEMDT
LPYTPQSTPKVKGMSKKEGAKRKINMSGYILFSSEMRAVIKARHPDFSFGELSRLVGTEW
RNLEATKKADYEERAAKIVDQQERDRPPQKQASPRAGTPVGTLMGVVPLPSTMGMINQTM
TPVSGMMGAYGQPYMPMQGPHEGLLSVATMLPHHAGGPLLPHHHLQQGVPGYPGMLHQGM
MGPGVNGMAGSPTQGNFMQQPGMFSPGPHAPPPYPGQGSPSHLQPTTPMFVAPPPKTQRV
LHSEAYLKYIEGLNSESTSVSKWDQTLKAQRRDAHMTKEQESRLPAHWLKSKGAHTTMAD
ALWRLRDLMLRDSLNISQGYNL
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgagctccaagaggagaagggccacttcgccctccagcagtgtcagtggaggg
ggggacctggatgattcctcctccacacctggcagtggcagaaaaagaagaagaatctcg
aacgtttctccagtagatacaattgctgtgtgccacgagctgttcaatgctgtcagggac
tacaaggacggccaagggagacaactttgtgaagttttccaaagggtaccaaagagaagg
aatcagcctgattactatgaagcagtgtcccagccaattgatatgacaaaaattctgtac
aaactgaagtcagaagattataatgatgtggagcagcttactgcagatttccagctcatg
ttcaacaatgccaaatcattctacaagagtgatactgaggagtatcaagctgcatgcaaa
ctgtgggaggtatatttgcaaacgaggaatgagtttgtgcaacctggggacggagatgag
gatgatgaagacggtgatgacatgatggataatccaggaatgtcaaacgaagatgagacc
ccaactggcaatttgaaggaattgtttgagcaactcttggaggctttagtgtcacatgct
gatccctcaggtcgtctggtcagtgaactgttccagaaattgccttccaaagtgcattac
ccagactactacgccattataaaggagccaatagatctcagaacaatcgctcaaagaata
cagattggatactataaaagtgtcaatgctatggccaaggacattgacctgatggccaaa
aatgccaaaacatacaacgaacccggatctcaggtttttaaggatgctaacaccataaag
aaagtctttatccagcggaagactgaacttgaacatgctgaacccactaaatctagtctt
cgcattagaaatcgcaggtctggccagggtgatcaactttctggcgtcagtgtagctctc
cactatggttcagagagtgaggacgaccctgtgctctctggctctgtgtgctacgacgag
ggagagtcagaggctgagagtcagagttctagcatggagatgagcaacccgatcttccag
ctttatgaagctgtgaggggtgcaaggaacaaccagggccaggtcttctccgaacctttc
cagcagctgccctcacgcagggagtatcctgactactatcagcagatcaaacaacccatc
gctttgcagcagatccgggcaaaaatgaagaactgcgagtatgaaagtgtggagcagatg
gaggctgacctcactctgatgtttgagaatgcaaagcgctacaacatgcctaactcaagc
atttacaaacgggccattaggcttcagcagatcttgcaggcaaaaaagaggggacttgtg
aggagggacgatgaagaaggagacagcattctgtcatctgatgcggggagcatcaagagg
aaaagccacaagaaaaatgtcaaaaagaacagaatgaagactttatacgccgcggtgaca
gaggccgtggaggccggcaccaaccgtcgtctttgtgatctgtttatggtcaaaccatcc
aagaaggactaccccgactactacaaagtcatccttgaaccgatggatctgaagaccatt
gagcacagcatccacactgagcgctacgtgtcggaggatgctttgatggaagacatgagg
ttgatgttccgaaacgcccggcattacaacgaggagggatctcaggtgtataatgatgct
gatattctggagaagatactgaaagacaagcgtaaggagatgggtcctttccctgaagaa
gaagatttggtatctcccaaactgaaactaagaaagattggtgtttctccgaagaagtcc
aaatacctcacccctcttcagcagaggttaaatgagctctacgatgccgtgcgcaacttc
accgaccgacgaggccgccgcctgagcaccatctttcttcgcctgccttctcgtgccgag
ttgcccgactactacgccaccatcaagaggcccatcgatatggagcgcatccgaagccac
atggcggcaggtcgttaccaagacgttgacgccatggtggaggaattttctcttatgttc
aacaacgcctgcatttacaatgagccggagtctctcatctatcgggacgctctggtgttg
caccgggtgctgctggggacgcgcaagcagcaggaaggaagcgaggacttcggacctcct
aatgtgggacatctggtgcgagagctgatcaggtccctgtttgtttccgtgatgggccac
caggacgaagagggccgatgctacagcgactctctggctgagatacccgccgtggatcca
gcgggccccgaaaagcctccgctaaactttgatgtcatcagggtgaacgtggaacgtggc
cactacaggagactggacgtcttccaggaacacatgtttgaggtgttggagaaggggagg
aggctgcacaggactgactctgagatatttgaagatgcagtggagctacaacatttcttc
attaaaatcagggatgagctttgcaagaacggagagattctgcagtcgtcttctctgatc
tacacttcaaaacatctgcacagtgacgtggagcaggagaagagggagaaaattcccaaa
gagattgaggaggacaggctaaaggctgaggaagagaagcaggaaaacaaagagggggtg
aaagccgagaacctgcagggacagtcaggtcagtcagattctgagtcagagcgtgtctac
actcaggactgcagctttgagaacatcacctaccacgtgggggactttgtctacgtggag
ccgtcagaggtcaacctgaaaccacacattgtctgtattgagcgcctgtgggaggataaa
gcaggtggcaaatggctctatggctgctggttctacaggccgagtgaaaccttccacttg
gcaacacgcaagtttcttgaaaaggaggtcttcaagagcgactattataacaaagtgtct
ctcggtaaagttctgggcaaatgtgtggtcctgtgtgtgaaggattatttcaaaatgcaa
gccgagggctacagagcagaggacgtgtacgtctgcgaatctcgctacgccgccaggaac
aagtcattcaagaagatcaagataatggccgtgcctgtgagctcggtgaaacttgtcccc
cgggaggtgccgttgcccgttgtccgcgtcgcctccatgttcgccaagccggactatgac
aagctgacaatttcatatgcaggcagcgggggcgccattgacaaggagaaggaggacgtc
cccattgagatgagtggagccgatcctggctgtcagcactacgaacagttgctctgcgac
aaaatgtggtttaaagtgggagactgtgtttacatccagtcacacggcctgtcaaagccc
cgggttgccaggatagagaagctgtgggtccagaacggaactactttcttctttgggccc
atctttattcaccctgaggaaacagagcacgaacccaccaagatgttctacaagagagaa
gtgtttctgagccacctggaggagaccttgcccatcacctgtgtcataggcaaatgtttg
gtgtcctcctttaaggactacctgtcatgcagacccaccgaggtttcggaggaggatgtc
ctgctgtgcgagagccgctacattgacgtggaaaagcagatgaaaaagttcaagggtctg
aaacgcttctcgtactcttccaaagtggtggaagatgagatctactatttcagaaaatta
atcgtaccacagaaggaagcgtccccccttttggacaagaaaatcaatgagcttgagctt
aagctggcagatatagaggatggagatgatgatatggaagatatggacgatgacgacgag
gctccacagacaccatctatgcctcagatgcaaacgcctctagcaaatgaaatggatacc
ctgccatacactcctcagtccactccgaaggtaaaaggcatgtctaagaaggaaggggcc
aagaggaagatcaacatgagtggctatatcttgttcagcagtgagatgcgggcagtcatc
aaagctcgacacccagacttctcctttggggagctgagtcgcctggtgggcaccgagtgg
aggaaccttgaagcgaccaagaaagctgactacgaagaacgtgcagccaagatagtggat
caacaggagcgtgacagaccgcctcagaagcaggcgtccccacgagcaggtacccccgta
gggacactgatgggggtggtacctttgcctagcactatgggaatgataaaccagaccatg
acacctgtgtcaggcatgatgggagcttacggccaaccttacatgcccatgcagggcccc
cacgagggcttgttgagtgtggccactatgctacctcaccatgcaggggggccccttctg
cctcaccaccatctccagcaaggtgtgcctgggtaccctggcatgcttcatcagggtatg
atgggccctggtgtgaatggtatggcaggaagtccgacacaaggaaactttatgcaacag
cctgggatgttcagcccaggaccgcatgctccaccaccgtatccaggacagggctcgccc
tcacacctgcagcccaccacccccatgtttgtggctccgcccccaaagacccagagggtg
ctccactcagaggcctacctgaagtacatcgagggcttgaattcagagtctaccagtgtc
agcaaatgggaccaaacactcaaagctcagcggcgtgacgcgcacatgaccaaagagcag
gagagccggctgccggcgcactggctgaagagcaaaggagcccacacgaccatggcggat
gcactgtggcgcctgcgcgacctgatgctcagagactctctgaacatctcccagggatac
aacctgtaa
DBGET
integrated database retrieval system
