Pseudomonas putida HB3267: B479_00945
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Entry
B479_00945 CDS
T02389
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03030
DNA replication
ppuh03410
Base excision repair
ppuh03420
Nucleotide excision repair
ppuh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B479_00945
03410 Base excision repair
B479_00945
03420 Nucleotide excision repair
B479_00945
03440 Homologous recombination
B479_00945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppuh03032
]
B479_00945
03400 DNA repair and recombination proteins [BR:
ppuh03400
]
B479_00945
Enzymes [BR:
ppuh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B479_00945
DNA replication proteins [BR:
ppuh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B479_00945
DNA repair and recombination proteins [BR:
ppuh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
B479_00945
NER (nucleotide excision repair)
GGR (global genome repair) factors
B479_00945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
Motif
Other DBs
NCBI-ProteinID:
AGA71107
LinkDB
All DBs
Position
202004..204751
Genome browser
AA seq
915 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFD
AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR
SSAALDRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM
GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPTLAIRGAKTLPAKLEEHRDA
AFLSYELATIKVDVPLDIEVDALVCGEPDRDALLALYTEMEFKSWIAEVQRDAAKAGDEI
APVAEQVAKVEPRYETILDQARFDFWLEKLRQAPLFAFDTETTGLDAQQAQLVGLSFAVE
PHEAAYVPLAHDYEGAPAQLDRTAVLQALKPLLEDPAKAKVGQNAKYDINILANGSPAIE
MRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHATIAFEDIAGKGAKQLTFNQIHLDKA
GPYAAEDADITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQGALVDAALLQV
QSGELGLKMAELEQRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTTKGQPSTAEAVL
DELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSD
PNLQNIPIRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNNLDV
HRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFA
RYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRRGAERTAINAPMQGTAA
DIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQHMSKAAQLDVP
LLVEAGIGANWDEAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcgcccctcgtcctggtggacggttcctcctacctgtaccgcgccttccac
gcgctgccgccgttgactacctccaagggcatgccgaccggcgcggtgaagggggtgctg
aacatgctcaagagcctgcgcaagcaataccccgacagcctgttcgcggtggtgttcgat
gccaagggtggcaccttccgcgatgccatgttcgctgaatacaaggcaaaccgcccgagc
atgcctgacgacctgcgggtacagatcgagccgctgcacgccagcgtcaaggcgctgggc
tacccgctgctgtgcgtcgagggggtcgaggccgacgacgtgatcggcaccctggcgcgc
agcagcgccgcgttggaccgcccggtgatcatctcgaccggtgacaaggacatggcgcag
ctggtggacgggcacattaccttggtcaacaccatgaccggaagcgtgctggacgtggct
ggcgtgcacgagaaatttggcgtcggcccggaacatatcatcgactttttggcgctgatg
ggcgacaaggtcgacaacatccccggtgtgccgggcgtgggcgaaaaaaccgcggtgggc
ctgctgaccggtatcggcggcggtctcagcgacctgtacgctaacctggacaaggtcccg
acgctggccattcgcggcgccaagaccctgccggccaagctggaagagcaccgcgacgcg
gcgttcctgtcctatgagctggctaccatcaaggtcgatgtgccgctggatatcgaagta
gatgccctggtgtgcggcgaacctgatcgcgacgcgttgctggcgctgtacaccgagatg
gaattcaagagctggatcgccgaggtgcagcgtgacgctgccaaggccggtgacgaaatc
gcgccggtcgcggagcaggtggccaaggtcgagcccaggtacgaaaccattctcgaccag
gcccgtttcgacttctggctggagaagctgcgccaggcgccattgttcgctttcgacacc
gagaccaccggcctggacgctcagcaggcccagctggtcggcctgtcgttcgccgttgaa
ccgcacgaagcggcctatgtgccgctggcccacgactatgaaggcgcgccggcccagttg
gaccgcactgccgtgctgcaggcgctgaagccactgctggaagacccggccaaggccaag
gtcgggcagaacgccaagtacgatatcaacatccttgccaatggctcgcccgctatcgaa
atgcgcggcgttgcctacgacaccatgctcgagtcgtacgtgctgaactccaccgccacc
cgtcacgacatggacagcctggcgcagaagtacctcgaccatgccaccattgccttcgag
gatatcgccggcaagggcgccaagcagctgaccttcaaccagatccacctggacaaggcc
ggcccctacgctgccgaagatgccgacatcaccctgcgcctgcaccaggcgctgcaggcg
cgcctggcacagacgccaagcgtgcagccggtgttgatggacatcgagatgccgttggtg
ccggtgctggccaagatcgagcgccagggggcgctggtcgatgccgcgttgctgcaggta
cagagcggtgaactggggctaaagatggccgaactcgagcagcgcgcctatgagctggcc
ggtgaggagttcaacctcggctcgcccaagcaactgggcgcgatcctctacgacaagctg
ggcatgccggtgctgagcaagaccaccaagggccagccatccacggcagaagcggtgctc
gacgaactggccgagcaaggttacccgctgccggaggtactgatgcagtaccgcagcctg
agcaagctcaagagcacctacaccgacaagctgccggggcagatcaacccgcgcaccggg
cgtatccacacctcataccagcaggcggtggcggccaccggtcgactgtcgtccagcgac
ccgaacctgcagaacatcccgatccgtactgccgaaggccggcgcatccgccaggctttc
gttgccagcccgggttacaagctgctggcggcggactactcgcagatcgagttgcgtatc
atggcccacctggccaaggacgaaggcttgctgcatgccttccgcaacaacctggacgtg
caccgcgccacggcggcggaagtattcggcgtagccctggaagacgtcaccaccgatcag
cgccgcagtgccaaggccatcaacttcggcctgatctacggcatgagcgcctttggcctg
gccaagcagatcggcgtagaccgcaagcagtcgcaggattacatcgaccgctacttcgcc
cgctacccgggcgtgttggcgtacatggagcgcacccgcgcccaggcggcggagcaaggc
tttgtagaaaccctgttcggccgccgcctgtacctgccggatatcaatgccaagaacccg
gccctgcgcagaggcgccgagcgcacggcgatcaacgccccgatgcagggtactgcagcc
gacatcatcaagcgggccatggtcaatgtggataactggctgagcgagagcgggctggat
gcacgggtgatcctgcaggtgcacgacgaactggtgctggaagtgcgcgaggacctggtg
gagcaggtgaaagatgaaattcgccagcacatgagcaaggccgcgcaactggatgtgccg
ctgctggtcgaggcaggaattggtgcgaattgggacgaagctcactga
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