Pseudomonas putida HB3267: B479_02415
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Entry
B479_02415 CDS
T02389
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
B479_02415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppuh03021
]
B479_02415
Transcription machinery [BR:
ppuh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B479_02415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AGA71399
LinkDB
All DBs
Position
complement(572465..574315)
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDYILSEYDRVTSEGGRLSDVLSGYIDPDDNIAAPTEE
VPIPGTKAAAAKEESDDDEDESESGDDEEEAESGPDPEVARQRFGAVNDQLQATNKVLKK
NGRTHQESIDALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVRDARM
PRADFLRMFPSNETDQTWSGDLAKRNTKWAAALGEKDAAIVACQQKLIDLETETGLTVAE
IKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcacccgcggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgcccttctgttggcggaagccgacaccgacgaagccgcggccgaa
gaagccgctgctgcgttggcggcagttgaaaccgatatcggccgcacgaccgacccggtg
cgcatgtacatgcgcgaaatgggcaccgtcgagctgctgacccgcgaaggcgagatcgaa
atcgccaagcgtatcgaggaaggcatccgtgaagtcatgggcgccatcgctcacttcccg
ggcactgtcgactacattctcagcgaatatgaccgtgtcaccagcgaaggcggccgtctg
tcggacgttctcagcggttacatcgatcctgacgacaatatcgccgcgccgaccgaagaa
gtgccgatcccaggcaccaaggccgccgctgcgaaggaagagtccgacgacgacgaggac
gaatccgaaagcggtgacgacgaggaagaggccgagagcggcccggacccggaagtcgcc
cgtcagcgtttcggcgcggtcaacgaccagcttcaggccaccaacaaggttctgaagaag
aatggtcgcacccaccaggaaagcatcgacgccctgcaggccctggccgatttgttcatg
ccgatcaagctggtaccgaagcagttcgaggtactggtagagcgtgttcgtgacgccctg
aaccgcctgcgccagcaggaacgcgccatcatgcagctgtgcgtgcgtgacgcccgcatg
ccgcgtgccgacttcctgcgcatgttcccgagcaacgaaaccgaccagacctggagcggt
gacctggccaagcgcaacaccaaatgggctgccgccctgggtgaaaaggacgctgccatc
gtcgcttgccagcagaagctgatcgaccttgagaccgaaaccggcctgaccgttgccgag
atcaaggaaatcaaccgtcgtatgtcgatcggtgaagccaaggcccgccgcgccaagaaa
gaaatggtcgaggcgaacctgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggcttgcaattcctcgacctgatccaggaaggcaacatcggcttgatgaaagcggtggac
aagttcgaataccgtcgcggctacaagttctcgacctatgccacctggtggatccgccag
gcgatcacccgttcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccgccagatgctgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgagcgcatggaaatgcctgaggacaagatccgcaaggta
ctgaagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagattcg
cacctgggcgacttcatcgaggactcgaccatgcagtccccgattgacgtggccacggtc
gaaagcctcaaggaagccactcgtgacgtgctctcgggcctgaccgcacgcgaagccaag
gtgctgcgtatgcgcttcggtatcgacatgaacaccgaccacaccctcgaagaggtgggc
aagcagttcgacgtgacccgcgagcggatccgtcagatcgaagcgaaggcgttgcgcaaa
ctgcgccacccgactcgcagcgagcatctgcgctccttcctcgacgagtga
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