Pseudomonas putida HB3267: B479_03135
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Entry
B479_03135 CDS
T02389
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppuh
Pseudomonas putida HB3267
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppuh03016
]
B479_03135
Enzymes [BR:
ppuh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
B479_03135
Transfer RNA biogenesis [BR:
ppuh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
B479_03135
Prokaryotic type
tRNA splicing ligases
B479_03135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
PRMT5
Motif
Other DBs
NCBI-ProteinID:
AGA71543
LinkDB
All DBs
Position
715012..716217
Genome browser
AA seq
401 aa
AA seq
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MDILQVAGGKPVKLWTDGVPVEGDARKQLLNKARMPFIFKHLAVMPDVHLGKGSTIGSVI
PTVGAIIPAAVGVDIGCGMIAARTSLHARDLPDNLHGLRNAIEHAVPHGKTFGKRDQGAW
ADVPAQADKAWGRLAGRFKAITDKYPRLEKTNNRHHLGTLGGGNHFIEVCLDEADRVWFM
LHSGSRGVGNAIGNLFIELAQADMRQHLANLPDKDLAYFEEGSRHFADYVEAVEWAQDYA
RQNRELMMLAVVGAARKALGKPFEASLEAVNCHHNYVQREQHFGREVLVTRKGAVSAQKG
QLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKSRFTVEDQRRATAHVECR
KDKEVIDEIPMAYKDIDAVMRAQQDLVEVVHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggacattcttcaggtcgccggcggcaaaccggtcaagttgtggaccgacggcgtaccg
gtggaaggcgacgcccgcaagcaactgctcaacaaggcgaggatgccgttcatcttcaag
cacctggctgtgatgccggacgtgcatctgggcaagggctcgaccatcggcagtgtgatc
cccacggttggcgcgatcatccccgccgcggtgggtgtggatatcggctgcggaatgatc
gccgcgcgcacgtcgctgcacgcccgcgacttgccggataacctgcatggcctgcgcaat
gccatcgagcacgccgtgccgcatggcaagaccttcggcaaacgcgaccagggcgcctgg
gccgatgtgccggcccaggctgacaaggcctgggggcggttggccgggcgcttcaaggcc
atcaccgacaagtacccgcggctggagaagaccaataaccgccatcacctggggacgctg
ggcggcggcaaccacttcatcgaggtgtgcctggacgaggccgaccgcgtctggttcatg
ctgcacagcggctcccggggcgtgggcaatgccatcggcaacctgttcatcgaactggcc
caggccgacatgcgccagcacctggccaacctgccggacaaggacctggcgtatttcgag
gaaggcagccgccatttcgccgactacgtcgaagcggtggagtgggcgcaggactacgcc
aggcagaaccgcgaactgatgatgctggcggtggtcggtgcggctcgcaaggcgctgggc
aaaccgttcgaggccagcctggaagcggtgaactgccaccataactatgtgcagcgcgag
cagcattttggccgagaggtgctggtgacgcgcaagggggcggtgtcggcgcagaaaggg
cagttgggcatcattcccggctcgatgggggccaagagcttcatcgtgcgagggctgggc
aacgaggagtctttctgttcctgcagccatggtgccggccgggtgatgagccggaccaag
gccaagagccgcttcaccgtggaagaccagcggcgggccacggcgcatgtggaatgccgc
aaggacaaggaggtgatcgacgagatccccatggcctacaaggacatcgatgcggtgatg
cgcgcgcagcaggacttggtggaggtggtgcacaccttgcggcaggtggtgtgtgtgaag
ggctga
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