Pseudomonas putida HB3267: B479_05705
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Entry
B479_05705 CDS
T02389
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03410
Base excision repair
ppuh03430
Mismatch repair
ppuh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B479_05705
03430 Mismatch repair
B479_05705
03440 Homologous recombination
B479_05705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuh03400
]
B479_05705
DNA repair and recombination proteins [BR:
ppuh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
B479_05705
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
B479_05705
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B479_05705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AGA72057
LinkDB
All DBs
Position
1283626..1285335
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AA seq
569 aa
AA seq
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MRIEPRPLPPTLPFLGNLPPLLTRLYAARGVQSEAELDKSLARLLPYQQLKGIEAGVDLL
VEAIDQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV
ALQRQPQLLITVDNGISSVEGVAAAKAAGLKVLVTDHHLPGAELPDADAIINPNQPGCSF
PSKALAGVGVIFYVLMALRARLRSLGRYETQPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCEDAALAQDMAQQLDDLNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDADWHQG
VIGILASRLKERYHRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGG
HAMAAGLSLPEANFPAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDREVWPNPTVR
WVELAYKLDVNEFRGNESVQLMIAHMEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaacctcgcccgctgccgccgaccctgccattcctgggtaacctgccaccc
ttgctgacccgcctgtacgccgcgcgcggcgtgcagagcgaggccgagctggacaaaagc
ctcgcgcgcctgctgccgtaccagcagctcaagggcatcgaggccggcgtggatctgctg
gtcgaggctatcgaccagcgccagcgcatcctcatcgtcggcgacttcgatgccgacggc
gccactgccagtactgtcggcgtgctgggcctgcgcctgctgggcgcggcccatgtcgac
taccttgtgcccaaccgcttcgaatacggctacggcctgaccccggaaatcgtcgaggtg
gcgctgcaacgccagccgcagctgctgatcaccgtggacaacggcatttccagcgtcgag
ggtgtggctgctgccaaagccgccgggctcaaggtgctggtcaccgaccaccacctaccg
ggcgcggagttgcccgacgccgacgccatcatcaaccccaaccagccgggctgcagtttc
ccgagcaaggcgctggccggggtaggggtgatcttctacgtgctgatggccctgcgtgcg
cgcctgcgcagcctggggcgctacgaaacgcagccgcagccgaacatcggcgaattgctc
gacctggttgccctgggcagcgtcgccgacgtggtgccattggatgccaacaaccgcatc
ctggtgcaccagggcctcgaacgcattcgtgccggccgcgcccgaccggggctgaaggcc
attcttgaagtggcccgtcgcgatcaccggcgtatcacctcgaccgacctcggcttcatc
ctcggcccgcggctgaacgctgccgggcgcctggacgacatgagcctgggcatcgaatgc
ctgctgtgtgaagacgcggccctggcccaggacatggcccagcagctggacgacctgaac
caggaccgcaagtccatcgaacagggcatgcagcgcgaggccctggcccagctcaaggac
ctgcctgtcgagtcgatgccatatggcctgtgcctgttcgatgccgactggcaccagggg
gttatcggtattctggcttcgcgcctgaaggagcgttaccaccggccgaccatcgctttc
gccgacgctggcgagggtatgctcaaagggtcggcgcgttcggtgccggggttccatatt
cgcgatgcgctggatgccgtggcggcgcgccacccgcaactgatcagcaagttcggcggc
cacgcgatggcggcggggttgtctttgcccgaggccaatttcccggcatttgccgaggcg
ttcgatgaagaagtgcgacgccagctgcgcgaagaggacctgaccggtcggctgttgtcc
gacggcagcctggcggtggaggagttccacctcgacctggccaaggccctgcgccatgcc
gggccctgggggcagcacttccccgagccgctgttccatggcgtgttccagctagtggag
caacgcgtggtgggcgagcggcacctgaaggtggtgctcaagagcgagtgcggctcggtg
cggctggacggcattgcctttggcattgaccgcgaagtgtggccgaacccgacggtgcgt
tgggtcgagttggcgtacaagctggatgtgaacgagttccgtggcaacgaaagtgtgcag
ttgatgattgcccacatggagccgcgctga
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