Pseudomonas putida HB3267: B479_06085
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Entry
B479_06085 CDS
T02389
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03030
DNA replication
ppuh03430
Mismatch repair
ppuh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B479_06085 (dnaE)
03430 Mismatch repair
B479_06085 (dnaE)
03440 Homologous recombination
B479_06085 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppuh03032
]
B479_06085 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppuh03400
]
B479_06085 (dnaE)
Enzymes [BR:
ppuh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B479_06085 (dnaE)
DNA replication proteins [BR:
ppuh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
B479_06085 (dnaE)
DNA repair and recombination proteins [BR:
ppuh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
B479_06085 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
AGA72133
LinkDB
All DBs
Position
1365975..1369499
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAAADPEAPLSRICFLAMNPKGYRNLTELISRGWTEGQRNGLVILQREWI
APASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMAMFPERFYVEVQRTNRARDEEY
VHAAVALADRFGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRMYSDQQYLK
SAEEMTELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDVNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCANNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHH
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALIRSGALDRLGPHFHDE
IKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGGMFEEADADVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRDTQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHEALKGDRLKWLGELITRHRGACPITLEYTGSDAKA
MLQFGEQWAIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccactccgaattctcgctggtcgacggcctg
gtgcggatcaagccgctggccaaggcgctggccgggatgaacatgccggcagtggcgatc
accgaccagagcaacatgtgctcgctggtaaagttctacaagactgccatgggcgcgggc
atcaagccgatctgcggcgccgacctgtggctggccgctgccgacccggaagcaccgctg
tcgcgtatctgcttcctggccatgaaccccaaggggtaccgcaacctcaccgagctgatc
tcgcgcggctggaccgagggccagcgcaacggcctggtgatccttcagcgtgaatggatc
gccccggccagcgagggcctgatcgccctgtccgcaggcaaggaaggtgacatcggcatg
gccttgctggcggggcggcaagatgaagccgaggccctgctgcaggactggatggcgatg
ttccccgagcgcttctatgtcgaggtgcagcgcaccaaccgcgcccgcgacgaggaatat
gtgcacgccgccgtggccttggccgacaggttcggcgctccgctggtggcaaccaacgat
gtgcgtttcatcaagcaatcggacttcgatgctcacgaaacccgcgtatgcatcggtgag
ggctggacccttgacgacccgcgccgcccaaggatgtacagcgaccagcagtacctgaag
tcggccgaagaaatgaccgaactgttcagcgacctgcccgacgccattgccaacaccgtc
gagattgccaagcgttgcaacatccaggtgcagctgggcaaatacttcctgcccgacttc
cccacgcccaatggcatgggcatcgatgactacctgcggcatgtgtcccacgaaggcctg
gaagagcgcctggcagtgctgtggccgaaagagaccacgcccaactacgaagagaagcgc
caggtttacctggaccgcctgaagttcgaactggacatcatcatccagatgggcttcccc
ggttacttcctgatcgtgatggacttcatcaagtgggccaagaacaacggtgtgccggtc
ggcccgggccgggggtcgggtgctggctcgctggtggcctacgtactgaagatcaccgac
ctcgacccgctggcctacgacctgctgttcgagcgcttcctcaaccctgaacgtatttcc
atgcccgacttcgacgtcgacttctgcatggatggccgtgaccgggtgatcgactatgtg
gccgaagcctatggccgcaacgcggtcagccagatcatcaccttcggtaccatggcggca
aaggcggtggtgcgagacgtggcgcgggtacagggcaagtcctacggcctggccgaccgc
ctgtcgaagatgatcccgttcgaagtgggcatgaccctggaaaaggcctacgagcaggaa
gagatcctgcgcgacttcctcaagggtgacgaagacgcccgcgaaatctgggacatggcc
ctgaagctcgagggcgtgacacgcggtaccggcaagcacgccggtggtgtggtcattgcc
cccaccaagctcaccgacttctcgccgatcgcctgtgatgaagagggcggcggcctggta
acccagttcgacaaggatgacgtcgaggccgccggcctggtgaagttcgacttcctcggc
ctgcggaccctgaccatcatcaagtgggcgatggagatcatcaaccgcgagcaggccaag
aagaacctgcccgatgtaaacatcgacttcatcccactggacgaccgcaagacctacgag
ctgttgcagaaggccgaaaccacggcggtgttccagcttgaatcgcggggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagaccttatcgcactggtggcgctgttc
cgcccaggcccgctgcagtcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctcgcctacccccatccggactaccagtacgaaggcctgaagccggtgctggca
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggct
ggctataccctcggcggcgccgacatgctgcgccgtgcgatgggtaagaagaagcccgag
gaaatggccaaacagcgcggtggtttcattgaaggttgtgccaacaacaatatcgatgca
gacctggctggtaacatcttcgacctggtggaaaagttcgccggttacggcttcaacaaa
tcccactccgccgcctatggcctggtttcgtaccagaccgcatggctgaaaacccaccac
ccggcgccgttcatggctgcggtgttgtcggcggatatgcacaacaccgacaaggtggtg
gtgctggtcgaggaagtgcgcagcatgaagctgcgcctcgacgcgcccgacgtgaacttc
tccgacttcaagttcaccgtcaacaatgacgggcgcatcgtctacggcctgggcgccatc
aagggcgtcggcgagggcccggtggaggcgatcgtcgaggcccgcgcccagggtggccca
ttcaaggacctgttcgacttctgtgagcgcatcgacctcaaacgggtcaacaagcgtacc
ctcgacgcgctgatccgcagtggtgcgctggaccgcctgggcccgcacttccatgacgag
atcaaggcctaccacgccaatatcgatatcaaccgtgcaaccctgctctcggcgctgggc
gaggccatcaaggctgccgagcaggccgcccacacagctgacagtggccacgtcgacctg
ttcggcggcatgttcgaagaggcggatgccgacgtctacgccaaccaccgcaaggtgcgc
gaactgaccctcaaggaacgcctgaagggcgaaaaggacacccttggcctgtacctcacc
ggccacccgatcgacgagtacgagaccgagatccgccgcttcgcccgccagcgcatcatc
gacctcaagccgtcacgcgatacccagaccatcgccggcatgatcattgccctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcgtcaccctggatgaccgctccgggcgc
atcgaggcgtcgctgtttgccgatgccttcatggcggcacagtccttgctgcagaccgat
gccatggtggttgtcgaaggcgaggtcagcaacgacgatttctccggtggcctgcgcctg
cgggtgaagcaggtgatgaccatggaagatgcgcgcaccaagctggccgagagcctgcgc
ctgaaggtggcacacgaagcgctcaagggcgaccggctgaagtggctgggcgagttgatt
acccgccatcgcggcgcttgcccgatcaccctcgaatacaccggcagcgacgccaaggcc
atgctgcagttcggcgagcagtgggctatcgacccggccgatgggctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
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