Pseudomonas putida HB3267: B479_07435
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Entry
B479_07435 CDS
T02389
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B479_07435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuh03019
]
B479_07435
03009 Ribosome biogenesis [BR:
ppuh03009
]
B479_07435
Enzymes [BR:
ppuh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B479_07435
Messenger RNA biogenesis [BR:
ppuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B479_07435
Ribosome biogenesis [BR:
ppuh03009
]
Prokaryotic type
rRNA processing factors
B479_07435
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGA72403
LinkDB
All DBs
Position
complement(1652489..1655731)
Genome browser
AA seq
1080 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIR
QVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQ
RLRDDNPEVLSNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPATVEEP
QPAAPVAPAPVAPEPSLFKGLVKSLVSLFAGKEEPAAAPVVTAAEKPAAERSPRNEERRN
GRQQSRNRNGRRDEERKPREERAERAPREERAPREERAPREERAPREERAPREERAPREE
RAPREERAPREERAPRQPREDRRGNRGEERVRELREPLDATPAEREERQPREERVAREER
APREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPR
VAEEAAEQAAELAEEQLPNEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGELI
DGSEEEGSEEQPQQHQATELGAELAAGLAVTAAVASSNISADAEAQANQQAELATAEVAQ
PVEQAEKFEQVEAAAEAEQVAVAPVVEQPVSEPVAVVEATAEPVVEVTPQPVVDEAPAAE
PVVVAEAPVEAPAVEAGEIEQAPTVVEAAPVAEQPAPVVEAQPEVVAEPAPVAVEPAPVE
APAVVEPATVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAAAEEPALEASDEQKPHHG
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcgactcaacccgaagagttgcgtgtagccctggtggacggccaacgt
ctctacgacctggacatcgagtccggcgcgcgcgagcagaaaaaggccaacatctacaaa
ggcaagatcacccgcatcgaacccagcctcgaagccgccttcgtcgacttcggctccgaa
cgtcacggcttcctgccgctgaaagaaatctcccgcgaatacttcaagaaagcccccgaa
gggcgggtcaacatcaaggaagtgctgagcgaaggccaggaagtcatcgtccaggtcgag
aaggaagagcgtggcaacaaaggcgccgccctcaccaccttcatcagcctggccggccgc
tacctggtgctgatgccgaacaacccgcgtgccggcggcatttcccgccgcatcgaaggc
gaagagcgcaacgaactgcgtgaagccctgaacggcctgaccgtgccgggcgacatgggc
ctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactgtggaccgccatcaaggaagcgtcccaggaccgcgccgcgccattc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcatcgatgcccaggaagaagccctgaccttcatccgc
caggtcatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtgccgctgttc
aaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtggtcgacctgccg
tccggcggttcgatcgtgatcgacccgaccgaagccctggtgtcgatcgacatcaactcg
gcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaacctggaagcg
gccgaggaaatcgcccgccagctgcgcctgcgtgacatcggtggcctgatcgtcatcgac
ttcatcgacatgaccccggcgaaaaaccagcgcgccgtcgaagagcgtgttcgcgagtgc
ctggaagccgaccgcgcccgcgtccaggtcggccgcatctcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgcccttcgctgggcgaaagcagcggcatcgtctgcccacgc
tgctccggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatcctgcgcctg
atcgaagaagaagccctgaaggaccgcaccgccgaagttcgcgcccaggtgccgatcccg
gtggctgccttcctgctcaacgagaagcgcaactcgatcaccaagatcgaactgcgcacc
cgtgcgcgcatcatcatcctgccgaacgatcacctggaaacccctcacttcgaagtccag
cgcctgcgcgacgacaatccggaagtgctgagcaaccagtccagctacgagatcgccgcc
gccgaagccgaagaagcgccgcagccgaccgccacccgcaccctggttcgccaggaagcc
gcagtcaagaccgccccggcccgcgccaacgcgccggtaccggccactgtcgaagaaccg
cagcctgccgcaccggtcgcccctgccccggtcgctccggagccaagcctgttcaagggc
ctggtgaagtcgctggtaagcctgttcgccggcaaggaagagcctgccgcagcgccggtt
gtcactgccgccgagaagccggccgccgagcgcagcccacgcaacgaagaacgccgcaac
ggccgtcagcagagccgcaaccgcaacggccgtcgcgacgaagagcgcaagccgcgtgaa
gagcgtgccgaacgcgcacctcgtgaagaacgtgccccgcgcgaagagcgtgcaccacgt
gaagaacgtgccccgcgcgaagagcgtgcaccacgtgaagaacgcgcaccacgtgaagaa
cgcgccccacgcgaagagcgtgcaccgcgtgaagaacgtgccccacgccagccacgcgaa
gaccgccgtggcaatcgtggcgaagagcgtgtgcgcgaactgcgtgagccactggacgcc
acccctgccgagcgtgaagaacgtcagccgcgcgaggaacgtgtagcccgtgaagaacgt
gccccacgtgaagagcgtgcacctcgcgaggaacgcgcacctcgtgaagaacgtgctcca
cgtgaagaacgcgcacctcgcgaagaacgtgctcctcgtgaagagcgtgcacctcgtgaa
gaacgtgctccacgcgaagaacgtgcccctcgcccaccacgcgaagagcgtcagccacgc
gtagccgaagaagccgccgagcaggctgccgagctggccgaagagcaactgccgaacgaa
gaactgctgcaggacgaacaggaaggcaccgatggcgagcgcccgcgccgccgttcccgt
ggccagcgtcgtcgcagcaaccgtcgtgagcgtcagcgcaacgccaacggcgagctgatc
gatggcagcgaggaagaaggcagcgaagagcagccacaacagcaccaggccaccgagctg
ggtgccgaactggccgccggcctggccgtgactgccgctgtcgccagcagcaacatcagt
gccgacgccgaagcccaggccaaccagcaggccgagcttgccaccgccgaagtcgcccag
ccggtcgagcaggctgagaagttcgagcaggtagaagctgctgccgaggctgaacaagtg
gctgtggctcctgtggtcgagcagccggtcagcgagcctgtggccgtggtcgaggcaact
gccgagccagtggtcgaagtcactccgcagccagtggtcgacgaagcacctgctgccgaa
ccggtagtggttgccgaagcaccggtcgaagcgcctgccgtcgaagccggtgaaatcgag
caggccccgaccgtggtcgaagccgctccggtcgccgagcaacctgccccggttgtcgaa
gcccagccagaagtggtggccgagcctgcaccagtggccgtcgagcctgcaccggtcgaa
gcccctgcggtggtggaacctgccactgtcatgctggccaacggccgtgcgccgaacgac
ccgcgtgaagtgcgtcgccgcaagcgtgaggccgaggctgcagccaaggccgcgcaggaa
gctgctgctgccgaggagccagccctggaagccagcgatgagcaaaagcctcatcacggt
tga
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