Pseudomonas putida HB3267: B479_19265
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Entry
B479_19265 CDS
T02389
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ppuh
Pseudomonas putida HB3267
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppuh03009
]
B479_19265
Enzymes [BR:
ppuh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B479_19265
Ribosome biogenesis [BR:
ppuh03009
]
Prokaryotic type
rRNA helicases
B479_19265
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AGA74745
LinkDB
All DBs
Position
complement(4246392..4247714)
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AA seq
440 aa
AA seq
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MFSQFALHERLLKAVAELNFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLN
RLVDLRERRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRK
VPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENRQQTL
LFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIVQWLLAN
ETFDKAIIFTNTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLALDRFKQGSSKVLVAT
DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER
YLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKAAAKRKPTAKPKAN
APLASADGLAPLKKRKPAAE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
gtgttctcccaattcgccctgcacgaacgcctgcttaaagccgtggccgagcttaacttt
gtcgagccaaccccggtgcaggccgcggccatccccctggccctgcaagggcgtgacctg
cgcgtgaccgcgcagaccggcagcggcaagaccgcggccttcgtgctgccgttgctcaac
cgcctggtcgacctgcgcgaacgccgcgtcgagatccgcgcgctgatcctgctgccgacc
cgtgagctggcccagcagaccctcaagcaggtacagctgttctcgcagttcacctacatc
aagtcgggcctggttaccggcggtgaagacttcaaggaacaggccgccatgctgcgcaag
gtgccggacgtgctgatcggcaccccgggccgcctgctcgagcagctcaatgccggcaac
ctcgacctgtcccacgtacaggtgctgatcctcgacgaagccgaccgcatgctcgacatg
ggcttcgccgaggacatggagcgtctgtgcaaggagtgcgagaaccgccagcagaccctg
ctgttctccgccaccaccggtggtgcggccctgcgcgacatcatcggcaaggtgctgaaa
gacccagagcacctgatgctcaacagcgtctcgcagctggccgaaggcacccgccagcag
atcatcaccgccgaccacgaccagcacaaagagcagatcgtgcagtggctgctggccaac
gaaaccttcgacaaggcgatcatcttcaccaacacccgcgccttggccgaccgcatctac
ggccacctggtggccaaggacgtgaaggccttcgtgctgcacggcgagaaggaccagaag
gaccgcaagctggccctggaccgcttcaagcagggcagctccaaggtgctggtggctacc
gacgttgcggcccgtggcctggacatcgacggcctggacctggtgatcaacttcgacatg
ccgcgcagcggtgacgagtacgtgcaccgcgtgggccgtaccggccgtgccggtggcgaa
ggcctggcgatctcgctgatcacccacaacgactggaacctgatgtcgagcatcgagcgc
tacctcaagcagcagttcgagcgccgggtgatcaaggaagtgaagggcacctacaacggg
cctaagaaggtcaaggcctcgggcaaggcggctggcagcaagaagaaaaaggtcgagaag
aagaccggtgacaagaaggcggccgccaagcgcaagccaaccgcaaagccgaaggccaat
gcaccgctggccagcgccgacggcctggcgccgctgaaaaagcgcaagcctgcggctgag
taa
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