Pseudomonas putida HB3267: B479_22695
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Entry
B479_22695 CDS
T02389
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B479_22695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuh03400
]
B479_22695
Enzymes [BR:
ppuh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B479_22695
DNA repair and recombination proteins [BR:
ppuh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B479_22695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
AAA_11
UvrD_C_2
Helicase_RecD
AAA_22
Viral_helicase1
SH3_13
UvrD-helicase
AAA_16
SLFN-g3_helicase
TraI_hel_assoc_N
T2SSE
AAA_28
AAA_17
nSTAND3
PhoH
NTPase_1
AAA_5
NACHT
Motif
Other DBs
NCBI-ProteinID:
AGA75428
LinkDB
All DBs
Position
complement(4989980..4992055)
Genome browser
AA seq
691 aa
AA seq
DB search
MSRSLVDLLPTPLHAEHLLALAPQHDSGDLLQLLDRWVERGWLRALDRAFVSFLEELAPG
SDPLLLLAAALASHQLGHGHVCLDLQQTLAEPDFALSLPPEGDALTGPLLLPSQLLADLD
LHAWRQRIAASPLVAAGDTSGQQARPLVLSGERLYLRRYWSYERRIDHTLRQRLTQSEAP
PADLRGRLAQLFDGGTPAGQVDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQA
PAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQVSAQVRGQIPTEVSTVHRLLGSRP
GSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDKDQLASVEAGA
VLGDLCRDAEEGCYSPETEAWLEQTGGESLAGIGLKAGDEQRNPLAQQVVMLRFSRRFGE
GSGIGQLARLVNRQDSHAARNLLATPPPDVHSLALKHEQDRAFDRLLLDGLNRGSDGPQG
YRSYLRTLGRFRPALDTAVDDPAWEQWAGKVLHSFEDFQLLCAVRRGAWGVEGLNERVAR
VLHNAGLIDSQQPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDERGEPLLRVAFPRNDG
SGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPDALNPVLTKELVYTGITRAKH
CFSLVEPRQGIFEEAVARKVRRISGLMLEQV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagcctagtcgacctgttgcccaccccgctgcacgccgagcacctgcttgca
ttggcgccacagcatgacagcggtgacctgttgcaactgctcgaccgctgggtagagcgc
ggctggctgcgtgccctggaccgagcgttcgtatcattcctggaggagctagcccccggt
agtgacccactgctgttgctggccgccgccctggccagccaccaactgggccacggccat
gtctgcctcgacctgcagcagaccctggccgagcccgatttcgccctgtccttgccgcct
gaaggcgacgccttgaccggccccttgctgctgccttcgcagttgctcgccgacctcgac
ctgcacgcctggcgccagcgcattgccgccagtccgctagtggccgccggcgatacttcg
gggcagcaagcgcggcctttggtgctcagcggagagcgcctgtacttgcgccgttactgg
agttacgagcggcgcatcgaccatacacttcgccagcgcctgacccagtccgaagcgccc
ccggccgacttgcgtggccgcctggcgcagctgtttgacggtggtacgccggctggccag
gtggactggcagaagctcgcctgcgcccttgccacccgcgcaggcttcagcatcatcacc
ggcggccccggcacgggcaagaccactaccgtggtacgccttttggccttgctgcaggcg
ccggcggtggagcagggcaggccattgcgcattcgcctggccgcgccgaccggcaaggcg
gctgcgcgcctgaccgaatccattggccagcaggtcgagcgcctgcaggtcagcgcccag
gtgcgcgggcagatccccaccgaggtcagcaccgtgcaccgcctgctcggcagccgcccc
ggttcgcggcacttccgccaccatgccggcaacccgctgccgttggacgtgctggtggtc
gacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgccctgccgcca
cgggcacgcctggtactgctgggcgacaaggaccagctggcctccgtcgaggccggtgcg
gtactgggtgacctgtgccgggatgccgaggaggggtgttactcgccagagaccgaggca
tggctggagcagaccggtggcgaatcgctggcgggcatcggcctcaaggccggcgatgag
caacgtaatccgcttgcccagcaagtggtgatgctgcgcttctcgcggcgttttggcgaa
ggtagcggcattggccaactggcccggctggtcaatcgccaggactcccacgcggcccgc
aacctgctggccacgccgccgcccgatgtgcatagcctggccctgaagcacgaacaggac
cgcgccttcgaccgcctgctgctcgacggcctgaaccgcggcagcgacggcccgcagggt
tatcgcagctacctgcgtacccttggccgtttccgcccggcactcgataccgccgttgat
gaccccgcgtgggagcaatgggcgggcaaggtgctgcacagcttcgaagacttccagttg
ctgtgtgcggtacgccgcggcgcctggggtgtcgaaggcctcaacgagcgggtggcgcgg
gtactgcacaatgccgggctgatcgacagccagcagccctggtacgaagggcggccggtg
ctggtcacccgcaatgactacggcctgggcctgatgaacggtgacatcggcatcgccctg
cgtctgccggatgagcgcggcgaacccttgctgcgcgtggccttcccgcgtaacgacggc
agtgggggcgtgcgcttcgtcctgcccagccggctgaacgaagtggaaacggtattcgcc
atgaccgtgcacaagtcccaaggctcagagttcagccacaccgcgctggtgctgccggat
gcgctcaacccggtgctgaccaaggaactggtatacaccggcatcacccgcgccaagcat
tgcttcagcctggtcgagcctcgtcagggtattttcgaagaggcggtggcgcgcaaggtg
cggcgtatttccgggttgatgctggagcaggtgtag
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