Pseudomonas putida HB3267: B479_22705
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Entry
B479_22705 CDS
T02389
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B479_22705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuh03400
]
B479_22705
Enzymes [BR:
ppuh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B479_22705
DNA repair and recombination proteins [BR:
ppuh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B479_22705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AGA75430
LinkDB
All DBs
Position
complement(4995726..4999208)
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AA seq
1160 aa
AA seq
DB search
MPNSTHLHPGFMIVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPQDDDQGGCGIAAAIDVQLPGSFMWQLYRSVLGRDEIPEVSLLDKAPLTWRLMRLLPAL
IERPHFEPLRRFLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWAAGEHILNTARGE
RKALPPGNRWQAELWRALLEDVGEQGMAQSRAGVHQRFIERINSLKQAPAGLPARVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQL
DDQSLHQHAHPLLAAWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSEGSPTTLLNQL
QDDILELRPLAETREQWHPVDPAKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPR
DVIVMLPAIDTYAPHIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSR
FAVSEVLDLLDVPAVRARFGIRENDLPTLHRWIEGAGIRWGLNAEQRASLGLPAGLEQNS
WRFGLRRMLLGYAVGVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVAGQALSEPATV
SQWGERLHALLQVFFLAEGERDEFLLVQLQDLRDSWLEVCEAVGLQDPLPLTVVREAWLS
GLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQQPLDFDLMASDYRP
GDRSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLAAGWQLAG
AEQGQPAEPGEQLLHALTQEHPLQPFSSRYFQKGSPLFSFAHEWQVLHQQGQEDQQADPG
LPPYHDEEALSLTQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASE
SLLGAALAEPDNAEQALQAQARRLQGCGVLPLAGFGELLQRELIEPLPDLLQRHRQLLQR
WPQLVEGALPVHFEHGPHRLEGWLGRVFQADDQSLLSITTVPNTISAGRNALKWHRLIAP
WVTHLAACAAGYPYNSALVASDLTLLLEPLPQAQAAQLLGDLLVARQAAMNAPLPVAAKT
AFAWLAQDDSDKALAAAARAYEGDERTSFGERSESIALARQFRDFAALTADETFEGWCEA
LYRPLFNAPWQTLGNPEKGA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacagcactcacctccaccccggcttcatgatcgtccacggcaaccgcctcgac
gacctgcgcagcctggtggtgagctggatgcgtcgctatcccttggcacctctggaaaac
gaaatcgccctggtgcaaagcaatggcatcgcccaatggctcaaactggcgcttgccgaa
gaccctcaggacgatgaccagggcggctgtggcatcgccgccgccatcgatgtgcaactg
ccaggcagcttcatgtggcagctttaccgcagcgtgctgggccgtgacgaaattcccgaa
gtctccctgctcgacaaggcaccgctgacctggcgtctgatgcgtctgctcccggctttg
atcgaacgtccccatttcgagccgttgcgacgcttcctcaccgacgacagcgacctgcgc
aagcgttaccagctcgccgagcgcctggccgacctgttcgaccagtatcaggtctaccgc
gccgactggctcaaggactgggccgctggcgagcacatcctcaacaccgcccgcggtgaa
cgcaaggcgctgcccccgggcaaccgctggcaggccgagttgtggcgtgcattgctggag
gatgttggtgagcagggcatggcgcagagccgtgccggcgtacatcaacgcttcatcgaa
cggatcaacagcctgaagcaggcacctgccggtctgccggcccgggtgatcgtattcggt
atctcctcgctgccagcccaggccctcgaggcactggccggcctggcacgcttcagccag
gtgctactgtgcgtgcacaacccctgccgccaccactgggccgatatcgttgccgacaag
gacctgctgcgccaccagtacaagcgccagcaacgcaagcagggcatgcccttgcaactg
gacgaccagtcgctacaccaacatgcccaccctttgctggccgcctggggcaaacaaggc
cgcgactacatcaacctgctcgacagctacgatgaccccggcagttaccagggcgtgttc
agcgacggtcgaatcgacctgttcagtgagggctcgcccaccacgctgctcaaccagttg
caggacgacatcctcgaactgcgtccgctcgccgaaactcgtgagcagtggcatccagtc
gacccagcgaaggaccgctcgatccgcttccacatcgcccacagcccgcaacgcgaagtg
gagatcctccacgatcagttactggcccggttcagcgcagacccaaccctgcgcccacgt
gacgtgatcgtcatgctgccggccatcgatacctacgcgccacatattcgcgccgtattc
ggccagttgcagcgcaacgatccgcgctacatcccgttcaccctgaccgaccagggccaa
cgtggccgcgaacccttgttgattgccctcgaacacctgctcaagctgccggacagccgc
tttgcggtcagcgaagtgctcgacctgctggatgtgccggcagtccgcgcccgtttcggc
atacgcgaaaacgatctgcccacactgcaccgctggatcgagggtgccggcatccgttgg
ggcctcaatgccgagcagcgggccagcctgggcttgcctgctgggctggaacagaacagc
tggcggttcggcctgcgccgcatgctgctgggttatgccgtaggcgtgggtgaggcctgt
gacggcatcgaaccctacgatgaaatcggtggcctggatgcggcgctgattggcccgctg
gtcgccttgctcgacgcgctcgaagtggccggccaggccttgtccgagcctgccactgtc
agccagtggggggaacgcctgcatgccttgctgcaagtgtttttcctggccgagggcgag
cgcgacgagttcctgctggtgcagttgcaggatctgcgtgatagctggctcgaggtgtgc
gaggccgtcggcctgcaagacccattgccgctgaccgtagtgcgcgaagcctggctgtcg
ggcctcgaccagggcaagttgtcccagcgcttcctcgccggctcggtgaacttctgtacc
ctcatgccgatgcgcgccatcccgttccgggtggtctgcctgctgggcatgaacgatggc
gattatccccgcgcccagcagccgctggacttcgacctgatggccagcgactaccgcccc
ggtgaccgctcgcgccgtgaggatgaccgctacctgctgctcgaagcgctgttgtcggcc
cgcgaccagctgtatgtcagctgggtcgggcgcagtatccgcgacaacagcgaacgcccg
gcctcggtgctcatcggccagttgcgcgatcaccttgcagccggctggcagctggcaggc
gcggagcaggggcagccggcagaaccaggcgagcaactgctgcacgcactgacccaggag
cacccgctgcaaccgttcagttcacgctacttccagaagggcagcccgctgttcagcttt
gctcacgaatggcaggtgttgcaccagcagggccaggaggaccagcaggctgaccccggc
ctaccgccataccatgacgaggaggccttgagcctgacccagctgaatgacttcctgcgc
cacccggtgcggcatttcttcagccagcgtctgaaggtgtacttcgaagcgctggaagca
ccgaccccggacgaggaacccttcgtcctcgataccctgcaacgatacggcgccagtgaa
agcctgttgggtgcagcgctggccgagccggacaatgccgaacaggccctgcaggcgcaa
gcccggcgcttgcagggctgtggcgtgctgccactggccggctttggcgaactgctgcag
cgcgagctgatcgagcccctgccagacctgctgcaacgccaccgccagctattgcaacgc
tggccgcagctggtcgagggggcattgcccgtgcatttcgagcacggcccacaccgcctc
gaagggtggcttgggcgggtattccaggcagatgaccagagcctgctcagcatcaccacc
gtacccaacactatcagtgccgggcgtaacgccctcaagtggcaccgcctgatcgcgccc
tgggtcacgcacctggcggcctgcgcggcgggctacccctataacagcgcgctggtggct
agcgatttgaccctgctgcttgagccactgccgcaagcgcaggcggcgcaattgctgggc
gacctgctggtagcccgtcaggcggcgatgaatgcgccgttgccggtcgcggccaagacc
gcgttcgcctggctggcccaggacgatagcgacaaagccctggctgctgctgcccgcgcc
tacgaaggcgacgagcgcaccagcttcggcgagcgcagtgaaagcatcgccctggcccgg
cagttccgcgactttgccgcgctcaccgctgatgaaaccttcgaaggttggtgcgaagcc
ttgtaccgcccattgttcaacgccccgtggcagaccctgggcaacccggagaaaggcgca
tga
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