Pseudomonas putida HB3267: B479_23100
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Entry
B479_23100 CDS
T02389
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B479_23100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuh03019
]
B479_23100
03400 DNA repair and recombination proteins [BR:
ppuh03400
]
B479_23100
Enzymes [BR:
ppuh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B479_23100
Messenger RNA biogenesis [BR:
ppuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B479_23100
DNA repair and recombination proteins [BR:
ppuh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B479_23100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
AAA_30
MarR_2
RecQ_Zn_bind
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGA75509
LinkDB
All DBs
Position
complement(5094918..5097014)
Genome browser
AA seq
698 aa
AA seq
DB search
MQREEAEKLLKVAIGSEAAEFRDGQWEAIDALVNQRKKMLVVERTGWGKSSVYFISTRIL
RERGQGPTIIVSPLLALMRNQIDAAKRLGIRAVTINSTNTHEWEQARQAVLADQVDCLLI
SPERLANDGFMENVLQPIADRIGLMVIDEAHCISDWGHDFRPDYRRIVNILRFLPANTPV
LGTTATANDRVVRDIQAQFGDINIVRGTLTRESLALQNLCMSDQATRLAWLAQTIPTLPG
TGILYTLTQRDSEQVARWLRANGVSAASYHSDVAHPEFDSSDQYRQHLEDELLANNMKVL
VATTALGMGYDKPDLGFVIHYQAPSSIVSYYQQVGRAGRAIDYSLGLLMSGEEDEKIHAF
FRRSAFPPAGQVWHLLGVLANFNGLTVRDLEEHSNLAHGQIEKILKLLSVENPAPLIKID
SKWFRTPIHYELDEERIARLTELREQEWRQVQAYLDEPGCLMAFLRRALDDPEFDDCGKC
AACLGKALVSGNVDSKLVHEAATFIRHAEFPIKPKKQVAKGGFQHYGFPTNLPMQLQAAE
GRVLSQWRDGGWGDLAADGKERGHFDDALVAAMAEMIQTRWQPNPKPTWLCCVPSLGHPT
LVPDFARRLAAALAIPFVECVSKVRKNEPQKWQYNRFHQCRNLDGVFAVGENIPSGPVLL
VDDMIDSGWTMTVIAALLRHAGSGPVYPLAISSTASNA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgggaagaagcagaaaaactcctgaaagtggccatcggtagcgaggctgcagag
ttcagggatgggcagtgggaagccattgatgctttggtcaatcagcgcaagaagatgctg
gttgttgagcgcacggggtggggcaagagctccgtgtacttcatcagtacgcggattctg
cgagaacgagggcaggggccaaccattatcgtttcgcccttgctggcgttgatgcgtaac
cagatcgatgcagccaagcgattgggtattcgagctgtcaccatcaactccaccaatacc
cacgagtgggagcaagcccgtcaggcggtgcttgccgatcaggtcgactgcctgctgatc
tctccagagcggctggccaatgatggctttatggaaaatgttctgcagcctatcgctgac
cgcattgggttgatggtgattgacgaggcgcactgcatttctgattggggacatgatttc
cgcccggactaccggcgcatcgttaacatcctgcgcttcctgccggccaatactcctgta
ctgggcacgactgccacagcgaatgaccgggtggtgagagatattcaggcgcagtttggc
gacatcaatatcgtgcgcggtacgctgacccgcgagagcttggcgctacagaacctctgc
atgtctgatcaggcgactcgtttggcgtggctggctcagaccatcccgacgctgccggga
acgggcattctctataccctcacccagcgcgatagtgagcaggtcgctcgctggctgcgt
gccaatggtgtcagtgctgcgtcgtatcacagtgatgttgcgcacccagaattcgacagt
agcgatcaataccgtcagcatctagaagatgagttgctggcaaacaacatgaaagtgttg
gtggctaccactgcgctgggaatgggttatgacaagccggatcttggctttgtcattcac
taccaggcgccaagttcaattgtttcctattaccagcaggtaggccgagcagggcgagct
atcgattattcgcttggcctgctgatgtccggagaggaagacgagaaaattcatgctttc
ttcaggcgctcggctttccctcccgccgggcaggtatggcacttactgggcgtactggcg
aacttcaatgggttgacggttcgtgacctggaagagcacagcaatctagcccatgggcag
attgagaagatcctcaaactcctcagcgttgaaaaccctgcaccactcatcaagattgat
agcaaatggttccggaccccgatccattacgagctggatgaggaacgaatcgcacggctc
acggagttgcgcgagcaagagtggcggcaggttcaggcttacctggatgagcctggttgc
ctgatggcatttttgcgtcgtgccttggatgacccagaatttgatgattgcggaaaatgc
gctgcctgcctgggcaaggcgctggtatcaggcaatgtggacagtaagctggtgcatgag
gccgcgacctttatccgacacgccgaatttcccattaagcccaagaagcaagtcgccaag
ggcggctttcaacactacggctttccgacgaacctcccaatgcagcttcaggcggccgag
ggccgggtactttcgcaatggcgtgatggtggctggggagatctggctgctgacggcaag
gagcgtggccattttgatgacgctttggttgcggccatggcggagatgatccaaacgcgc
tggcagcctaaccccaaacctacgtggctgtgctgtgtgccctcattggggcatccaacg
ttggtccctgactttgctcggcggctggcggctgctctggcgattcccttcgtcgagtgc
gtaagcaaggtcaggaaaaacgagccacagaagtggcaatacaatcgcttccaccagtgc
cgaaatttagatggtgtgttcgctgtaggcgaaaatatcccttctggcccggtgctgctg
gttgatgacatgatcgattcaggctggacgatgaccgtcattgctgcgctgctcaggcat
gcgggcagcgggcctgtctatccgctggcaatttcatctacggcaagcaatgcatga
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