Pseudomonas putida HB3267: B479_23975
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Entry
B479_23975 CDS
T02389
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
B479_23975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuh03019
]
B479_23975
03009 Ribosome biogenesis [BR:
ppuh03009
]
B479_23975
Messenger RNA biogenesis [BR:
ppuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B479_23975
Ribosome biogenesis [BR:
ppuh03009
]
Eukaryotic type
Pre-60S particles
RNases
B479_23975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
AGA75684
LinkDB
All DBs
Position
complement(5279607..5280149)
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AA seq
180 aa
AA seq
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MQNPQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHNDEVLARMDEW
NTRTHGASGLTQRVRESKVGMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMR
NLENYFHYRNLDVSTLKELAARWAPDVRDSFKKGNTHLALDDIRESIAELRHYREHFIKV
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacccacagaacctgatctggatcgacctggaaatgaccggcctggatccggac
agcgacgtcatcatcgagatggccaccattgtcaccgacagcgaactgaacaccctggcc
gaagggccggtgattgccatccaccacaatgacgaagtgctggcgcgcatggacgagtgg
aatacccgcacccatggcgcttcgggcctgacccagcgcgttcgcgagagcaaggtcggc
atggccgaagccgaggcgcagaccattgccttccttgagcagtgggtaccgaaaggcaag
tccccgatctgtggcaacagcatctgccaggaccgccgtttcctgtaccgacacatgcgc
aacctggaaaactacttccattaccgcaatctcgatgtttcgaccctgaaggaactggct
gcacgctgggcacctgatgtgcgcgacagcttcaagaagggcaatacccacctggcgctg
gacgacatccgcgaatcgatcgccgaactgcgccactatcgcgagcacttcatcaaggta
tga
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