Pseudomonas putida HB3267: B479_24365
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Entry
B479_24365 CDS
T02389
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B479_24365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuh03019
]
B479_24365
Enzymes [BR:
ppuh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B479_24365
Messenger RNA biogenesis [BR:
ppuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B479_24365
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGA75762
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All DBs
Position
5372221..5374104
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AA seq
627 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERVTKQKIPDGDLMGFDASQVEAEKPEVRERQQNNGRGGRNQQARGEGGKDANGGR
KDKGKDKGKAKQQAADKPADKEKSGDKQQQQRKPRDKKPRQQQQQASNGSVPKVPADRDP
EEFLDDDIDNFGNRADYVSPYQGKNQGRNRRPGANAGQGQGQGNGRSNTGGQGRNSGQQR
NGGGGEKRPARANNGGGARRDGGGRGRPARDDAARQEPAVRNPRQPEKQPVIIRKESKLD
RYPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tatacccagccgacccccgtgcaacagcgggcgattcccgccgtgttgcaaggccgcgac
ctgatggtcgccgcacagacaggtactggtaaaaccggcggtttcgccctgccgatcctc
gagcgcctgttcccggccggccaccccgacaagtcgcagcgccatggcccgcgccaacct
cgcgtgctggtcctgaccccgacccgcgaactggcagcccaggtgcatgacagcttcaag
gtctatgcccgtgacctgccactggtcagcgcctgcattttcggcggcgtcggcatgaac
ccgcagatccaggccattgccaagggtgtggacgtgctggtcgcctgccctggccgcctg
ctcgacctggccggccaaggcaaggttgacctggcccacgtggaaatcctggtgctggac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaagtcctcgcccgc
ctgccggccaagcgccagaacctgttgttctcggccaccttctccaaggacatcaccgac
ctcgccgacaagctcctgcacaacccggagcgaatcgaggtcaccccgccgaacactacc
gtcgagcgtatcgagcagcgcgtctaccgcctgcccgccagccacaagcgcgcgctgctg
gcgcacctgatcacccagggtgcctgggaacaggtactggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggaaaagcacggcctgaccgccgccgcaattcat
ggcaacaagagccagaacgctcgcaccaaggccttggccgacttcaaggccaacagcgtg
cgcgtactggtcgccaccgacatcgccgcccgtggcctggacatcgaccagctgccgcac
gtggtcaacttcgagctgccgaacgtagaggaagactacgtccaccgtatcggccgtacc
ggccgtgccgggcgttcgggcgaggccatttccatggtcgcgccggatgaagagaaactg
ctcaagagcatcgagcgggtaaccaagcagaagattcctgacggcgacctgatgggtttc
gacgccagccaggttgaagcagaaaagcctgaagtacgcgaacgccagcagaacaatggc
cgtggtggccgtaaccagcaggcccgcggcgaaggcggcaaagacgccaacggcggccgc
aaggacaagggcaaggataaaggcaaggccaagcaacaggctgcggacaagccggccgac
aaggaaaagagcggcgacaagcaacagcagcaacgcaagccgcgtgacaagaagccacgc
cagcagcaacagcaggccagcaacggcagcgtgccgaaagtgcctgccgaccgtgatcct
gaagagttcctggacgacgatatcgacaacttcggcaaccgtgccgactatgtcagcccg
taccagggcaagaaccagggccggaatcgtcgcccgggtgccaatgccggccaaggtcag
ggccagggtaatggccgcagcaacaccggtggccaaggtcgcaacagcggccagcagcgc
aacggcggtggcggcgagaaacgtccagcccgcgctaacaacggtggcggtgcccgtcgt
gatgggggtggccgtggccgcccggcccgtgacgatgctgcccggcaagagccagccgtt
cgcaacccgcgccagccggaaaaacagccagtgatcatccgcaaggaatccaagctcgac
cgttacccgacgcctgagcagctggatgatctgccgagccgcccgcgcggtgagcgcccg
gcgctgttgacccgcaagggctga
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