Pseudomonas putida HB3267: B479_25615
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Entry
B479_25615 CDS
T02389
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B479_25615 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppuh03021
]
B479_25615 (rho)
03019 Messenger RNA biogenesis [BR:
ppuh03019
]
B479_25615 (rho)
Transcription machinery [BR:
ppuh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
B479_25615 (rho)
Messenger RNA biogenesis [BR:
ppuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B479_25615 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
AGA76012
LinkDB
All DBs
Position
complement(5657248..5658507)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatcttttggaaatggccgaacag
atgggcatcgaaaacatggcccgttcgcgcaaacaggacgtgattttcgccctgctgaag
aagcacgcgaaaagcggcgaagagatctcgggtgacggcgtgctggagattctccaggat
ggtttcggtttcctgcgttcggctgatgcgtcctacctggccggccctgacgatatctac
gtctcgcccagccagatccgccgcttcaacctgcgtaccggcgacaccatcgtcggcaag
atccgcccgccgaaggaaggggagcgttacttcgccctgctgaaggtcgacaccatcaac
ttcgaccgcccggaaaacgcgaagaacaagatcctgttcgaaaacctgacgccgctgttc
ccgaacaagcgcctgaagatggaagccggtaacggctccaccgaagacctgaccggccgc
gtcatcgacctgtgcgccccgatcggcaaaggccagcgtggcctgatcgttgctccgccg
aaagcgggcaagacgatcatgttgcagaacatcgcggccaacatcacccgtaacaacccc
gagtgccacctgatcgttctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctccaccttcgacgagccgccaacccgccacgtg
caggttgccgaaatggtaatcgagaaggccaagcgcctggtcgagcacaagaaggatgtg
gtcatcctgctggactccatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtactgaccggtggtgtcgacgcccacgccctggagaagccgaagcgcttc
ttcggcgccgcgcgtaacatcgaggaaggcggttcgctgaccatcatcgctaccgcgctg
gtcgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggcaccggcaac
atggagctgcctctggaccgccgcatcgccgagaagcgcgtgttcccggccatcaacatc
aaccgctccggtacccgccgcgaagagctgctgactgccgacgacgagctgcagcgcatg
tggatcctgcgcaagttgctgcacccgatggacgaaatcgccgccattgagttcctggtc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtcgatgaagcgcaagtaa
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