Pectobacterium punjabense: E2566_01270
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Entry
E2566_01270 CDS
T06530
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppuj
Pectobacterium punjabense
Pathway
ppuj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E2566_01270 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppuj03021
]
E2566_01270 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppuj03400
]
E2566_01270 (rpoC)
Enzymes [BR:
ppuj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E2566_01270 (rpoC)
Transcription machinery [BR:
ppuj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E2566_01270 (rpoC)
DNA repair and recombination proteins [BR:
ppuj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E2566_01270 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QJA18664
LinkDB
All DBs
Position
272380..276603
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELTETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEIKSIEGDVTHQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEQWCDMLEENSVDAVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNAKFVMNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGSEVSGGETVANW
DPHTMPVVTEVSGFIRFADMIDGQTITRQTDELTGLSSIVVLDSAERTGSGKDLRPALKI
VDGKGEDVLIPGTDMPAQYFLPGKTIVQLEDGVQIGAGDTLARLPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTEFLEGEQAEVSRIKIANRQLEADGKITATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEAPV
VPQVSADEASANLAELLNAGFGSSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcgtggtcttttggtgaagttaaaaag
ccagaaaccatcaactaccgtacgttcaagcctgagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagattatgagtgcttgtgcggtaagtataagcgcctgaaacac
cgtggtgttatttgtgagaagtgcggcgttgaagtaacccaaactaaagtacgtcgtgag
cgtatgggtcacatcgagctggcttctccaactgcgcacatctggttcctgaagtcactg
ccttcccgtatcggtttgctgttagatatgccgctgcgtgatattgagcgtgtgctttat
tttgaatcttatgtcgtggttgaaggcggcatgaccaaccttgagcgccgtcagatcctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgaattcgacgcgaaaatg
ggcgccgaagcgatccaggctctgctgaagaacatggatctggagcaggaatgcgagcag
ctgcgtgaagagctgaccgaaactaactccgaaaccaaacgtaaaaaactgaccaagcgc
attaagctgctggaagcgttcgtacagtctggtaacaagccagagtggatgatcctgacc
gttctgccggtactgccgccagatctgcgtccgttggttccgctggatggtggtcgtttt
gcgacttccgacctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccagatatcatcgtgcgtaacgaaaaacgtatgttgcag
gaagcggttgatgcgctgttggataacggccgtcgcggtcgcgcgatcaccggttctaac
aaacgccctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgttggtccatac
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagctgccaagaaaatg
gttgagcgcgaagaagccgtcgtatgggatatcctggacgaagtcatccgtgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtttgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagcgatccaactgcacccgttggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgtacacgtaccgttgacgctggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcttgtcccctgcgaatggtgagccaatcatc
gttccttctcaggacgtggtattgggtctgtattacatgacgcgtgactgtgttaacgcc
aaaggcgaaggcatggtgctcacgggtcctaaagaagctgaacgtgtttatcgtgccggt
ctggcctctctgcatgcgcgcgttaaagtgcgtattacagaagagatcaagagcatcgaa
ggcgatgttacgcatcagacgtcgattattgatacgactatcggccgtgccatcctgtgg
atgatcgtaccgaaaggtctgccgtactcgatcgttaaccagcctttgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattttgggtctgaagccgacggttatcttc
gctgaccagactatgtacaccggttttgcttacgcggcgcgctctggtgcttccgtaggt
atcgatgacatggttatcccggagaaaaaagccgagattatcgaagaagcagaaaccgaa
gttgccgagattcaggagcagttccagtctggtctggttaccgcgggcgaacgctataac
aaagtgatcgatatctgggcagcggcgaacgaacgtgttgcgaaagcgatgatggaaaac
ctgtccgttgaggatgtggttaaccgtgatggcgtggttgagcgtcaggtttctttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagatggttccatcatcgagacaccaatcacc
gcaaacttccgcgaaggtttgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtttggcggataccgcactgaaaacggcaaactccggttatctgactcgtcgtctg
gttgacgttgcacaggatctggttgtgaccgaggacgattgtggtacccatgaaggtatc
atgatgacgccggttatcgagggtggtgatgttaaagaaccactgcgtgagcgcgtactg
ggtcgtgtaacggctgaagacgtgatcaaaccgggcaccgcggacattctggttccacgt
aacacgctgctgaacgagcagtggtgtgacatgttggaagagaactccgttgacgctgtt
aaagtacgttcagttgtaagctgcgaaaccgactttggcgtgtgcgccaattgctacggt
cgcgatctggctcgtggtcatatcatcaacaaaggtgaggctatcggggttatcgcggca
cagtccatcggtgagccaggtacacagttaaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgagtccagcattcaggtgaaaaacaaaggtagcctgaaactg
agcaacgcgaagttcgttatgaacagcaacggtaaactggttattacttcacgtaatacc
gaactgaaactgatcgacgaattcggacgtactaaagaaagctataaagtgccttatggt
gcggtgatggcgaagggtgacggctcagaagttagcggtggcgaaactgtcgcaaactgg
gacccgcataccatgcctgtggtgaccgaagtgagcggtttcatccgctttgctgacatg
attgacggtcaaaccattactcgccagaccgacgaactaactggtttgtcttctatcgtg
gttctggatagcgcagagcgtactggtagcggtaaagacttgcgtccagcactgaaaatc
gttgacggtaaaggtgaagatgtactgattcctggtactgatatgccagctcaatacttc
ctgccgggtaaaacgattgttcagttggaagatggagtgcagattggtgccggtgataca
ttggcgcgtctccctcaggaatccagtggtaccaaggatattaccggtggtctgccacgc
gtagccgacctgttcgaagcacgtcgtccgaaagagccggcgattctggcagagatcagc
ggtatcatttccttcggtaaagaaaccaaaggtaaacgccgtctggtaatttctccgttg
gatggcagcgatgcttacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaagtggtggaacgtggtgacgttgtttccgacggcccagagtctccgcacgatatc
ctgcgtctgcgtggcgtgcatgcagtaacgcgttatatcaccaacgaagttcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttgacgcgggtagcacggagttcctggaaggcgaacaggca
gaagtctctcgcatcaagattgccaaccgtcagttggaagcggatggtaagatcacggca
acgtacagtcgcgatctgctgggtatcaccaaagcatctctggcgaccgagtccttcatt
tctgcggcatcgttccaggaaaccactcgcgtactgaccgaagctgctgtcgcaggtaaa
cgtgatgaactgcgtggtctgaaagagaacgtcatcgtgggtcgtctgatcccagcgggt
acgggttatgcgtaccatcaggatcgtatgcgccgccgtcaggcaggcgaagcacctgtc
gtgcctcaagtgagtgccgatgaagcttctgctaacctggccgaactgctgaatgcaggc
tttggtagcagcgacgacgagtaa
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integrated database retrieval system
