Pectobacterium punjabense: E2566_03325
Help
Entry
E2566_03325 CDS
T06530
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppuj
Pectobacterium punjabense
Pathway
ppuj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E2566_03325 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppuj03021
]
E2566_03325 (rpoD)
Transcription machinery [BR:
ppuj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E2566_03325 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
QJA19032
LinkDB
All DBs
Position
complement(728482..730317)
Genome browser
AA seq
611 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTNDADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSSEEMDDDDEEEDDEEEEDDNSIDPELAREKFTELREQYETTRQVIKEHGRSH
ALAAQEILNLSEVFKQFRLVPKQFDFLVNSMRSMMDRVRTQERLIIKLCVEQCKMPKKNF
VTMFTGNETNNTWFAAAVAMGKPWSEKLNDVEEDVTRSLQKLQQIEEETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRS
ATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctgcttgtcacccgtggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcatcgactcggatcag
atcgaagatatcatccagatgattaacgacatgggcatccaggtgatggaagaagcaccg
gatgctgacgatctgttgctggccgaaaacaccaatgatgccgatgaagatgcggcagag
gctgctgcgcaggttctatccagtgttgaatcggaaattggccgtactaccgatccggtt
cgcatgtacatgcgtgaaatgggtaccgttgaactgttaacacgtgaaggcgagatcgat
atcgccaaacgtattgaagatggtatcaaccaggttcagtgctctgttgccgagtatcct
gaggctattacctacctgttagaacaatacgatcgcgtcgaagcgggcgaaagccgtctg
tccgatctgatcaccggcttcgttgatcctaatgcggaagaggacatcgcccctaccgcg
actcacgttggttctgagctttcgagcgaagaaatggacgatgacgacgaggaagaagac
gacgaggaagaagaagacgacaacagtatcgatcctgaactggcgcgtgaaaagttcacc
gaactgcgtgagcaatacgagacgacccgtcaggtaatcaaagaacacggccgcagtcat
gcgctggcagcacaggaaatcctgaacctgtctgaagtgttcaaacagttccgtctggtg
ccgaaacagttcgatttcctggttaacagcatgcgttccatgatggatcgcgtccgtact
caggaacgtttgatcatcaaactgtgcgttgaacagtgcaaaatgccgaagaaaaacttc
gtcaccatgttcaccggcaatgaaaccaataacacctggtttgccgcagcagtcgcaatg
ggcaaaccttggtctgaaaagctgaatgatgttgaagaagatgtcacccgcagcctgcaa
aaattgcagcagatcgaagaagaaaccggtctgacgatcgagcaggttaaagacatcaac
cgccgtatgtcgattggcgaagcaaaagcacgccgcgccaagaaagaaatggtggaagcc
aacctgcgtctggttatttctatcgcgaagaaatacaccaaccgtggtttgcagttcctc
gacctgattcaggaaggcaacatcggtctgatgaaagcggtagataagttcgaatatcgc
cgtggttacaaattctcgacctatgcaacctggtggattcgtcaggcgattactcgttct
atcgccgatcaggcgcgtactatccgtattccggtacacatgattgagacgatcaacaag
ctgaaccgtatctctcgtcagatgttgcaggaaatgggtcgtgaaccgacgccggaagag
ctggctgaacgtatgctgatgccggaagacaagatccgtaaagtgctgaaaatcgcgaaa
gagccgatttcaatggaaaccccgattggtgatgatgaagattcacatctgggcgatttc
atcgaagatacgacgctggagctgccgctggattccgctacatcggaaagcctgcgttcg
gcgacacacgacgtactggctggcttgactgcacgtgaagcgaaagtcctgcgcatgcgt
ttcggtatcgatatgaacaccgaccatacgctggaagaagtcggcaaacagtttgatgtt
acgcgtgagcgtatccgtcagatcgaagcgaaagcgctgcgtaaactgcgtcacccaagc
cgttctgaagtgctgcgtagcttcctggatgattaa
DBGET
integrated database retrieval system
